Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01245 ATGTCCAGCAGTGGCAGCCACAGTGCAGAAGGTTCATCAAGCATCATCCCTCTAGATTACCACCTCCAGCAACAGCACCAGCACCAACAGCTGCAGCAGCAGAGTCCAGTCACACTTAGCCGCTATGAGTCTCAGAAGAGAAGGGACTGGAACACTTTTGGACAATACTTGAAGAACCAAAGACCCCCAGTTGCTCTCTCTCAGTGCAATTGCAACCATGTCCTTGATTTTTTAAGGTATCTCGACCAGTTCGGAAAGACCAAGGTTCACCTCCAAGGAGCAGCCTATGAGGAAAATGGAGGCTCTCCAGAGACTAACCCTTTTGCTAGTGGCTCCATCCGTGTCTACCTTAGGGAGGTCAGGGAGTGCCAAGCTAAGGCTAGAGGTATACCTTACAAGAAGAAAAAGAAGACCCCTAAGGCAAATCTTGAAGAATCATCAACCTCCTCCATCCATTTCTCTTGA 465 0.486 MSSSGSHSAEGSSSIIPLDYHLQQQHQHQQLQQQSPVTLSRYESQKRRDWNTFGQYLKNQRPPVALSQCNCNHVLDFLRYLDQFGKTKVHLQGAAYEENGGSPETNPFASGSIRVYLREVRECQAKARGIPYKKKKKTPKANLEESSTSSIHFS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01245 154 Pfam ALOG domain 32 93 IPR006936 -
Vimu5g01245 154 Pfam ALOG domain 94 122 IPR006936 -
Vimu5g01245 154 ProSiteProfiles ALOG domain profile. 41 136 IPR006936 -
Vimu5g01245 154 PANTHER PROTEIN G1-LIKE2 94 141 IPR040222 -
Vimu5g01245 154 MobiDBLite consensus disorder prediction 128 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01245 Vimu-Chr5 22107573 22108133 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01245 5 22107573 22108133 Vimu5g01245 5 22107573 22108133 ECH
Vimu5g01245 5 22107573 22108133 Vimu2g00773 2 4732070 4732621 ECH
Vimu2g00773 2 4732070 4732621 Vimu5g01245 5 22107573 22108133 ECH
Vimu4g01163 4 10326389 10329990 Vimu5g01245 5 22107573 22108133 ECH
Vimu4g01163 4 10326389 10329990 Vimu5g01245 5 22107573 22108133 PCT