Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00635 ATGGCTCCCAGTGACAACAAATCCAACGATGTATCCGGGTCCAATTCGACCCGTTTGGACAAAGAGATCCGATACCGCGGGGTCAGGAAGAGACCATGGGGCCGCTACGCCGCCGAGATCCGAGACCCCGGGAAGAAAACACGCGTCTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCGCGAGCGTATGATGCGGCGGCGCGTGATTTCCGCGGCGCGAAGGCGAAGACAAATTTTCCCACACACGCGGAACTTACCCACGTGGCGCGTAGCCCAAGCCAGAGCAGCACCCTCGAGTCTCCCTCTCCGCCGCCGCCGCTTGACCTCACTCTCACCCCACTCGCCGCCACCGGGGCGTTTGTCTTCCCTGTTGCCCGCCCCGTGGTTTTCTTTGACGCGTTCGCCCGTGCAGAGGTCCGGGCTTTCGATCTTCCCGTTACCACTTTCCGCCGCACCGCCGTCGTCGCCACCACCCAGAGTGATTCCGACTCGTCCTCCGTCGTGGACTACGAGCGGGTCCCACATCGGAGAGTGTTGGATCTCGACCTTAATGTTCCTCCTCCGCCGGAGGTTGCATGA 582 0.6289 MAPSDNKSNDVSGSNSTRLDKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTHAELTHVARSPSQSSTLESPSPPPPLDLTLTPLAATGAFVFPVARPVVFFDAFARAEVRAFDLPVTTFRRTAVVATTQSDSDSSSVVDYERVPHRRVLDLDLNVPPPPEVA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00635 193 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Vimu5g00635 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 170 - -
Vimu5g00635 193 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vimu5g00635 193 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vimu5g00635 193 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vimu5g00635 193 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vimu5g00635 193 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Vimu5g00635 193 MobiDBLite consensus disorder prediction 1 16 - -
Vimu5g00635 193 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Vimu5g00635 193 MobiDBLite consensus disorder prediction 1 23 - -
Vimu5g00635 193 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vimu5g00635 193 MobiDBLite consensus disorder prediction 88 107 - -
Vimu5g00635 193 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00635 Vimu-Chr5 7473636 7474217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00635 21 156 AP2-EREBP Transcription Factor Family AT3G15210 60.897 7.84e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu5g00635 AP2 5.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00635 5 7473636 7474217 Vimu2g00686 2 4141163 4141834 ECH
Vimu5g00635 5 7473636 7474217 Vimu5g00635 5 7473636 7474217 ECH