Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00603 ATGCTGCGATTCCCTAACTTCTTCGCTGTCAACGTCGGTCGCTCTAACCTCCCTCCACTTCTTCTATCCGTTTCAGCGGCCGCCTCTCCGTCGGGGAACAGAAACCCGCCGCCGCTCCTGATGGCGCCGCGCGATTCGATGGTGGCGGAGTACGCGAAATCTAACCGGTCGTCGTGCAAGGCGTGCTCCAAAGCCATTGAAGGAAAGAGTTTGAGGTTGGCTTTGGTGTCCAAGGGCAATGGTCCATACGACGTCGTCAAATGGCACCACCTTCATTGCTTCCCTGTAGCCTCTCATTCTCCTTCCTCTCCTCAAGCAATCAAAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTTTGATAAAATTATTTTCTGAAAATGGAAAGTCGGAAGAGAAGGTTCATCAAGCAACAGAAGAGGTAGAAAATGAACTTCAAGAGACTGAGGAACATGATTCAAAGAGAACAAAGTTGTGGACACCTGATGTTAAAGCTGCGGTGAGCATTAAATTTTCAGTTTCTGATGTCAACAGCAAATACAAGGATGCTACCCTTCTACCAAAATGGAAGGCTTTCCAAACAGTCATATTTCTGGAACGGGATGATGGTCTGCGTGATTCAAGTAAAATTGCTGCATTTGATTTTGATGGATGTCTTGCAAAAACAGACGTGAAGAGAGTGGGTGCAAATGAATGGACCCTCATGCATTCGTCAATTCCTGATAAACTACAGAGCCTATACAATGATGGCTACAAACTGGTAATTTTCACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTGGCTGTGGACTCAAAAGTTGGGCGTCTGAATAATTTTATTGAGAGAGTGAAGGTTCCAGTTCAGGGATTTCTTCGTCAATCCAATCATGTCCATGCTGAATGCAATCTTCCTGTTTTTATAGCTTGTGGGGTTGGTCTGAAATCAGGAGCAGACAAAAAGAATGATGATGCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAGCACTTCAACTCTGGCATTGTCATTGATATGGATCAGTTATTTTTTCTTCCGTTCAGTAGTTCAATTGATGCAATATCCTTTTATGTTGGTGATGCAGCCGGGAGAAAATCAGATCACAGTGATGCAGATATTAAATTTGCGGAGGCCATTGGTTTAAAATTTTATCTCCCTGAAGACTACTTCGCTTGA 1218 0.4425 MLRFPNFFAVNVGRSNLPPLLLSVSAAASPSGNRNPPPLLMAPRDSMVAEYAKSNRSSCKACSKAIEGKSLRLALVSKGNGPYDVVKWHHLHCFPVASHSPSSPQAIKGFSSLKSSDQEALIKLFSENGKSEEKVHQATEEVENELQETEEHDSKRTKLWTPDVKAAVSIKFSVSDVNSKYKDATLLPKWKAFQTVIFLERDDGLRDSSKIAAFDFDGCLAKTDVKRVGANEWTLMHSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKVGRLNNFIERVKVPVQGFLRQSNHVHAECNLPVFIACGVGLKSGADKKNDDAFRKPKPGMWHLMEQHFNSGIVIDMDQLFFLPFSSSIDAISFYVGDAAGRKSDHSDADIKFAEAIGLKFYLPEDYFA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00603 405 Pfam Polynucleotide kinase 3 phosphatase 210 404 IPR013954 -
Vimu5g00603 405 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 47 129 IPR001510 GO:0003677|GO:0008270
Vimu5g00603 405 NCBIfam DNA 3'-phosphatase 198 404 IPR006551 -
Vimu5g00603 405 Coils Coil 128 155 - -
Vimu5g00603 405 Gene3D - 188 405 IPR023214 -
Vimu5g00603 405 FunFam Poly [ADP-ribose] polymerase 41 149 - -
Vimu5g00603 405 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 45 404 - -
Vimu5g00603 405 SMART zf_PARP_3 50 126 IPR001510 GO:0003677|GO:0008270
Vimu5g00603 405 FunFam Bifunctional polynucleotide phosphatase/kinase 188 405 - -
Vimu5g00603 405 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 50 124 IPR001510 GO:0003677|GO:0008270
Vimu5g00603 405 SUPERFAMILY HAD-like 193 404 IPR036412 -
Vimu5g00603 405 NCBIfam HAD-IIIA family hydrolase 210 397 IPR006549 -
Vimu5g00603 405 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 47 145 - -
Vimu5g00603 405 Gene3D - 43 149 IPR036957 GO:0003677|GO:0008270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00603 5 6607593 6615798 Vimu5g00603 5 6607593 6615798 ECH