Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00591 ATGTCTGAGGTGAAGATAATCGGGGTGGTGGGCGGTGGCCAAATGGGATCGGGAATAGCGCAAGTTGCTGCCATGCACGGCGTGGACGTTGTCCTTCACGACCTCGATCAGCGAGCCCTTTCCATAGCCTCGTCTTCCATCTCCTCCTCCATCGACCGTTTTGTTTCCAAAGGAGTCCTTTCTAAGGCGGCGGGAGTTGAGGTGTTTAAACGACTGCGTTTTACCACGAATTTAGAGGACTTTCACGCGGCGGATTTTATAATCGAAGCGATTGTGGAATCCGAAGACGTGAAGAAGAGTTTATTCGTTAAATTGGACAAGATTGCGAAGAGTTCTGCGATTTTGGCTTCAAACACGAGTTCTATCTCCATCACTCGTATAGCGTCCTCTACAACCAGGCCGCGTCAGGTGATCGGAATGCATTTTATGAACCCTCCGCCTCTGAAGAAATTGATAGAGATTATACGGGGAGCAGACACTTCTGACGAGACATTTGCTACTACGAAAGCATTGTCAGAGAGGTTGGGCAAGGTAGTAATTACCTCCCAGGATTATTCAGGTTTCATAGTGAATCGAATCCTTATGCCTATGATAAATGAAGCCTTTTTTACTCTCTACACTGGGGTTGGAACCAAAGAGGATATTGACAGAGGAATGAAGCTAGGTACTAGCCATCCATTGGGTCCTTTAGAGCTTGCAGACTTCATTGGATTGGATGTGTGCTTGTCAATAATGAGAGTTCTTCATGCTGGTCTTGGAGACAATAAATATGCACCATGCCCTCTCCTTGTGCAGTACGTTGATGCTGGAAGACTTGGAAGAAAGCGAGGTATTGGCGTGTATAAATATAGTGAAGAGCCAAAGTCTACAAAGTCATCTTCTCGTCTCTAA 891 0.4613 MSEVKIIGVVGGGQMGSGIAQVAAMHGVDVVLHDLDQRALSIASSSISSSIDRFVSKGVLSKAAGVEVFKRLRFTTNLEDFHAADFIIEAIVESEDVKKSLFVKLDKIAKSSAILASNTSSISITRIASSTTRPRQVIGMHFMNPPPLKKLIEIIRGADTSDETFATTKALSERLGKVVITSQDYSGFIVNRILMPMINEAFFTLYTGVGTKEDIDRGMKLGTSHPLGPLELADFIGLDVCLSIMRVLHAGLGDNKYAPCPLLVQYVDAGRLGRKRGIGVYKYSEEPKSTKSSSRL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00591 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 185 IPR036291 -
Vimu5g00591 296 Gene3D - 2 189 - -
Vimu5g00591 296 ProSitePatterns 3-hydroxyacyl-CoA dehydrogenase signature. 184 209 IPR006180 GO:0006631|GO:0016491|GO:0016616
Vimu5g00591 296 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 1 288 - -
Vimu5g00591 296 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 184 IPR006176 GO:0006631|GO:0070403
Vimu5g00591 296 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 187 289 IPR008927 -
Vimu5g00591 296 Gene3D - 190 295 IPR013328 GO:0016491
Vimu5g00591 296 FunFam Fatty oxidation complex, alpha subunit 4 189 - -
Vimu5g00591 296 Pfam 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 283 IPR006108 GO:0006631|GO:0016491|GO:0016616
Vimu5g00591 296 PIRSF HCDH 2 296 IPR022694 GO:0006631|GO:0016616|GO:0070403
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00591 62 296 Acyl Lipid Metabolism Gene Families AT3G15290 74.468 3.14e-130 368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00591 5 6418847 6433882 Vimu5g00591 5 6418847 6433882 ECH