Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00520 ATGGAGCCTGTGGTCCACACCCTTCTTTTCTGCCCTTCTGCTTCCTATAAACACCCTCTTTCACTTCATTGCTCCAAAAAACTTCTTCCTCTCTGCAACACCCTTTTGCACACAATGGAGAGGAAGAGATCACTGCTTGAGAGGGTCAGAAAGAATGTGGAAGAGGAACTGGAGAATGAAGTGGAGGAGGAGGATGAAACTGGACCTTCTCTCACTGAAGAAGAGAAAAAAAGAGGGCTTGGTAGCAGCAATAGTGGTGGTGGGAGAAGACCCTCAACTGGGGCTGCTGCTGCTGCTGCTGCTGGAGGAGTTTCTCCACCTTCATGTCAAGCAGAGAGATGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTCTGTGAGTTTCACTCCAAAGCACCTGTTGTGGTGGTTGCAGGTCTCAGACAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCTGAGGCTGCCAATGAGGGCAGCAAAGGCCATCACCACCCTAAGGAAACAACACAGTGCAGAATTCAGATGAACCTTCCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 669 0.5067 MEPVVHTLLFCPSASYKHPLSLHCSKKLLPLCNTLLHTMERKRSLLERVRKNVEEELENEVEEEDETGPSLTEEEKKRGLGSSNSGGGRRPSTGAAAAAAAGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAANEGSKGHHHPKETTQCRIQMNLPGSSGYKSFNIR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00520 222 MobiDBLite consensus disorder prediction 173 222 - -
Vimu5g00520 222 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Vimu5g00520 222 SUPERFAMILY SBT domain 107 187 IPR036893 GO:0003677|GO:0005634
Vimu5g00520 222 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 83 189 IPR044817 GO:0003677
Vimu5g00520 222 Pfam SBP domain 109 182 IPR004333 GO:0003677
Vimu5g00520 222 Gene3D - 99 170 IPR036893 GO:0003677|GO:0005634
Vimu5g00520 222 MobiDBLite consensus disorder prediction 179 202 - -
Vimu5g00520 222 Coils Coil 36 66 - -
Vimu5g00520 222 MobiDBLite consensus disorder prediction 54 112 - -
Vimu5g00520 222 MobiDBLite consensus disorder prediction 203 222 - -
Vimu5g00520 222 FunFam Squamosa promoter-binding-like protein 14 101 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00520 Vimu-Chr5 5396372 5397470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00520 88 192 SBP-box Gene Family AT1G53160 64.151 7.47e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu5g00520 SBP 1.6e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00675 2 4067301 4068823 Vimu5g00520 5 5396372 5397470 ECH
Vimu4g01404 4 14560915 14561937 Vimu5g00520 5 5396372 5397470 ECH
Vimu5g00520 5 5396372 5397470 Vimu2g00675 2 4067301 4068823 ECH
Vimu5g00520 5 5396372 5397470 Vimu5g00520 5 5396372 5397470 ECH
Vimu4g01404 4 14560915 14561937 Vimu5g00520 5 5396372 5397470 PCT