Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00518 ATGAAGATAAAAAATCTCACCTCTTATATGATTGAATCAGGGGACGTTCCACGAGTTGATGGTCAGTTGGCAGTGTCAAGGGCATTCGGTGACAAAAGCCTGAAGGTACACTTGAGCTCAGAACCACATGTGATTGTGGAGTTGATAGGCGATGATGCAGAGTTTATTATCTTAGCCAGTGATGGGTTATGGAAGGTGATGACAAATCAAGAAGCAGTTGATGCAATCAGAGATGTTAAGGATGCTCGCTCTGCAGCAAAGATCCTTACTGAAGAAGCACGTAACAGGAAAAGCTCAGATGATATCTCTTGTGTTGTTGTGAAATTTCAGTGA 333 0.4234 MKIKNLTSYMIESGDVPRVDGQLAVSRAFGDKSLKVHLSSEPHVIVELIGDDAEFIILASDGLWKVMTNQEAVDAIRDVKDARSAAKILTEEARNRKSSDDISCVVVKFQ 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00518 110 ProSiteProfiles PPM-type phosphatase domain profile. 1 109 IPR001932 -
Vimu5g00518 110 CDD PP2Cc 15 109 IPR001932 -
Vimu5g00518 110 PANTHER PROTEIN PHOSPHATASE 16 109 IPR015655 GO:0004722|GO:0006470
Vimu5g00518 110 SUPERFAMILY PP2C-like 16 109 IPR036457 -
Vimu5g00518 110 Gene3D - 2 110 IPR036457 -
Vimu5g00518 110 Pfam Protein phosphatase 2C 11 102 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00518 Vimu-Chr5 5394083 5394544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00518 14 110 PP2C-type Phosphatase Gene Family AT3G15260 80.412 1.87e-50 159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00518 5 5394083 5394544 Vimu5g00518 5 5394083 5394544 ECH