Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00512 ATGGCAAGATACTCCTCTCTCTCCCTCTTTTCCCTCCCAAATGCTAGTGGATACAGAAACTGTGAAGTGAAAGAAGGTGTGAGAACAAAAAAGGTTTGTGGTGAGAGAAAGAGAGAGATAGAGATGGTGGGCTCAGGAACAGCAACAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCACGAGGCCCTCAGAACTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGACCAAGAGTGAGAGGTGGCAATGGGTGCAAGGTTGGGGATGATAACGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGGGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTCAGCAAAATGTCGATTCAGTTATATAATTATGGAGAAGGGTGGTGCCATGTTGTAGGGAGTTACAGAATATTAACGAATGACAACACTTCCTCTCTGCACTTTACTCTGATTAGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCTACGGAGTGTGAGCCTAATATGACCAACTACTGGCAAAGCTCCTTTGATGCTCTACCTCCTGAATGGATAGAACAGTTTGAGTCAGGCATTCAGACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAGCTTGGTTCTTGCAAGATTATTCCTGAAGACCTTCATTTTGTGCTAAGAATGAGACACACTTTTGAATCTCTAGGCTACCAATCAGGATTCTACCTCTCACAACTCTTCTCTTCAACTAGGAGCACTTCCTCTTCTACCTCCCTTCCTTCAAAACCATCCACCATTCCAATCAGGTCACCCCCTCCACCCCTCAACTGGGGTCAGAGGCCAATTGGGTCTGCTACTTCATTGCTACCCTCTCCAACTTTTCAACATGCAGCCAGAATGGGGTTCCCACAGGCCAAAGATGAAACTCAGATGTTCCTCATGCCTCATGCATCATCAGAGCATGTGAGAATGGGAGACATGATGAGGGAGCATGAGAATGACATAAAGTGGCCAAATGGATTATCTATCTTCAATGTACTCACCGGAAGATCTGATGATGCTAAACTCTTGTTCAATCAAGAGAGTGCAAATCCAACCTCAGCAGTGCAGAATGCTAATGTGGCAAACCCAAATGAGTTATTGAGCTTGGATGGCCAATCTGAAGGGACAAGGAAAGTGGACAAGTTCAAGAGGTGCTTCACTCTACCTGCCAAAGTGGTTTCATCTTCATCCTCTACTTCAATGGATCACCATCATCAACAAGCAAGTGGAGAGTATAGGAATTCAGGTGGCATGTACCAGGATGTCATGGAGACCTTTTTGGAGTGA 1395 0.4559 MARYSSLSLFSLPNASGYRNCEVKEGVRTKKVCGERKREIEMVGSGTATDRSKEAVGMMALHEALRTVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGWCHVVGSYRILTNDNTSSLHFTLIRLMGKVTSDKCHKWVFKEPTECEPNMTNYWQSSFDALPPEWIEQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRSTSSSTSLPSKPSTIPIRSPPPPLNWGQRPIGSATSLLPSPTFQHAARMGFPQAKDETQMFLMPHASSEHVRMGDMMREHENDIKWPNGLSIFNVLTGRSDDAKLLFNQESANPTSAVQNANVANPNELLSLDGQSEGTRKVDKFKRCFTLPAKVVSSSSSTSMDHHHQQASGEYRNSGGMYQDVMETFLE 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00512 464 MobiDBLite consensus disorder prediction 274 303 - -
Vimu5g00512 464 PANTHER GB|AAF34833.1 42 464 IPR044170 -
Vimu5g00512 464 MobiDBLite consensus disorder prediction 430 452 - -
Vimu5g00512 464 MobiDBLite consensus disorder prediction 430 450 - -
Vimu5g00512 464 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 61 254 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00512 Vimu-Chr5 5334473 5338564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00512 62 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 27.411 1.81e-14 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00512 5 5334473 5338564 Vimu5g00512 5 5334473 5338564 ECH
Vimu4g01405 4 14579535 14581723 Vimu5g00512 5 5334473 5338564 PCT