Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00483 ATGCAGAAAGGAGCTGCTATAGTCTGGTCTTTGGTGAACTTCTGCACAATGATGCTGCTAATTCCTTCTGCCATGTGTCACTTACCAACCCTTTACATTGGAATGGAATGCATGCGGACCCACAGCTATAAGCTTGCTGAGCAGTTTTTTATTCAGGCCAAATCAACTTGCCCCTCAGATCCACTTGTGTATAATGAACTTGGAGTTGTTGCCTATCATATGAAGGAGTATAAGAAAGCTGTGTGGTGGTTTGAGAAAACATTAGCATTGATACCAACTGCTTTATCTGAAATGTGGGAATCGACTGTAGTCAATCTTGCCCATGCATACAGAAAACTGAAGATGTACCAAGAAGCAATTTCGTACTATGAGAAGGCACTTGCATTATCAACGAGAAGTGTGAGCACTTATGCTGGTCTTGCATATACTTATCACTTACAGGATGATTTCACTACAGCAATAACATATTATCACAAAGTGAGTAACTCTGTTCCAATATGGGCCTTGTGGCTTAAACCAGATGATCAGTTCTGCACTGAGATGTTAAGTTGGGCTCTAATTGATGAAAAGTCTAAGGGGCTTTGA 585 0.4085 MQKGAAIVWSLVNFCTMMLLIPSAMCHLPTLYIGMECMRTHSYKLAEQFFIQAKSTCPSDPLVYNELGVVAYHMKEYKKAVWWFEKTLALIPTALSEMWESTVVNLAHAYRKLKMYQEAISYYEKALALSTRSVSTYAGLAYTYHLQDDFTTAITYYHKVSNSVPIWALWLKPDDQFCTEMLSWALIDEKSKGL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00483 194 ProSiteProfiles TPR repeat profile. 61 94 IPR019734 GO:0005515
Vimu5g00483 194 Pfam Tetratricopeptide repeat 63 130 - -
Vimu5g00483 194 PANTHER CELL DIVISION CYCLE 16,23,27 27 178 - -
Vimu5g00483 194 Pfam Tetratricopeptide repeat 139 161 IPR011716 -
Vimu5g00483 194 Gene3D Tetratricopeptide repeat domain 14 188 IPR011990 GO:0005515
Vimu5g00483 194 SMART tpr_5 100 133 IPR019734 GO:0005515
Vimu5g00483 194 SMART tpr_5 27 60 IPR019734 GO:0005515
Vimu5g00483 194 SMART tpr_5 134 167 IPR019734 GO:0005515
Vimu5g00483 194 SMART tpr_5 61 94 IPR019734 GO:0005515
Vimu5g00483 194 SUPERFAMILY TPR-like 32 164 IPR011990 GO:0005515
Vimu5g00483 194 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00483 45 168 Glycosyltransferase AT3G04240 29.032 1.68e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00483 5 4968183 4972595 Vimu5g00483 5 4968183 4972595 ECH