Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00377 ATGGAAACCCCGTCTTCCAATGGATCGGTTTCGAAGCGTTCACTGAGGAGGAAAGTGAATTTGAGAAACTATGATGAGGATCTGATGGATGAGTTGTTTGAGAAGCAGTTGGGGGGCGGTTTGAAGAAGAGGAGTAGGACCAAAGAGGATTTGGAGAAGGAGACTGAGACTGAGGCTATGATTGCGATGTCGCTTGGTTTCCCAATTGATGCTTTGCTCGATGAGGAGGTTAGGGCTGGGGTTGTGAGGCAGTTGGGTGGGAAGGAGCAGAATGATTACATAGTCATAAGGAATCATATATTGGCTTTGTGGAGGAGGGGGAATGTGAGGTTGTGGTTGAGTAAAGGGATGATTAGAGAAACTGTGAGTAATGAGTATGAGCATTTGATTAATTCTGCTTATGACTTCCTTTTGTACAATGGCTACATAAATTTTGGGGTTTCACCAGCATTTACTTCTCAATTGCCTGAGTCAAATGAGGGAACTGCTATTGTTATTGGTGCTGGCCTGGCAGGGTTGGCAGCTGCGAGGCAGCTGTTGTTGTTTGGTTACAAGGTTGTGGTTTTGGAAGGCAGAAGTCGGCCTGGAGGGCGAGTTTATACTCAGAAGGTAGGGCGTGATGGGAAATTTTCTGCCGTTGATCTTGGTGGGAGTATTATCACTGGCATTCATGCTAACCCTTTGGGGGTTCTGGCTAGACAACTTTCTATACCACTTCATAAAGTCAGAGATAATTGCCCTTTATATAAGCCAAATGGGGCACCCGTTGATACAGAAATGGATGCAAGGGTTGAATTTGTATTTAATAGGTTGCTTGACAAGGTTATGGAGCTGAGGCAAATTATGGGTGGGTTCGCAAGTGATACTTCACTTGGTTCAGTCTTGGAGACGCTCAGGCAGTTGTATAGTGTGACCAAAAGTACTGATGAGAGGCAGTTGTTTGATTGGCATCTTGCAAATTTGGAATATGCAAATGCTGGGTGCCTTTCAAATCTTTCGGCTGCCTATTGGGATCAGGATGATCCTTATGAAATGAGTGGTGATCACTGTTTTCTTGCTGGAGGGAATACTAGGTTGATAAAAGCTCTATGTGAAGGGGTTCCTATTTTCTATGGAAAGACGGTCAATACTATAAGATATGGAGGTGAGGGTGTTGAGGTCATTGCTGGGGACCAAGTCTTTCAAGCAGATATTGCCTTATGTACTGTACCCCTTGGAGTTCTGAAAAAGAAGGCCATCAATTTTGAACCTGAATTACCTGCAAGGAAACTGGCAGCAATTGAGAGGATGGGGTTTGGGCTGCTGAACAAAGTTGCTATGGTTTTTCCTTATGTATTTTGGGGGGAAGATCAAGACACATTTGGATGTCTCAATGAATATAGTCATCAACGTGGGGAGTTTTTCCTATTTTACTGTTACCACACAGTTTCTGGAGGCCCAGCACTTGTTGCGCTGGTGGCTGGGGAAGCGGCACAAGTCTTTGAGTCCACAAATCCTTCCATTTTGCTCCATCGTGTGTTGAATGTTTTAAAAGGTATCATATCTATTTTATGA 1554 0.4408 METPSSNGSVSKRSLRRKVNLRNYDEDLMDELFEKQLGGGLKKRSRTKEDLEKETETEAMIAMSLGFPIDALLDEEVRAGVVRQLGGKEQNDYIVIRNHILALWRRGNVRLWLSKGMIRETVSNEYEHLINSAYDFLLYNGYINFGVSPAFTSQLPESNEGTAIVIGAGLAGLAAARQLLLFGYKVVVLEGRSRPGGRVYTQKVGRDGKFSAVDLGGSIITGIHANPLGVLARQLSIPLHKVRDNCPLYKPNGAPVDTEMDARVEFVFNRLLDKVMELRQIMGGFASDTSLGSVLETLRQLYSVTKSTDERQLFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMSGDHCFLAGGNTRLIKALCEGVPIFYGKTVNTIRYGGEGVEVIAGDQVFQADIALCTVPLGVLKKKAINFEPELPARKLAAIERMGFGLLNKVAMVFPYVFWGEDQDTFGCLNEYSHQRGEFFLFYCYHTVSGGPALVALVAGEAAQVFESTNPSILLHRVLNVLKGIISIL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00377 517 Pfam SWIRM domain 70 145 IPR007526 GO:0005515
Vimu5g00377 517 Pfam Flavin containing amine oxidoreductase 170 513 IPR002937 GO:0016491
Vimu5g00377 517 FunFam Lysine-specific histone demethylase 1A 57 158 - -
Vimu5g00377 517 PANTHER FLAVIN MONOAMINE OXIDASE 164 514 - -
Vimu5g00377 517 Gene3D - 57 156 IPR036388 -
Vimu5g00377 517 ProSiteProfiles SWIRM domain profile. 52 154 IPR007526 GO:0005515
Vimu5g00377 517 Gene3D - 245 514 - -
Vimu5g00377 517 SUPERFAMILY FAD-linked reductases, C-terminal domain 431 514 - -
Vimu5g00377 517 SUPERFAMILY Homeodomain-like 54 157 IPR009057 -
Vimu5g00377 517 SUPERFAMILY FAD/NAD(P)-binding domain 162 450 IPR036188 -
Vimu5g00377 517 Gene3D - 164 429 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00377 Vimu-Chr5 3495833 3497386 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Vimu5g00377 Amino_oxidase 5.8e-56 CL0063