Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00373 ATGGATCTTCTGTGGAATGCGTATTCTAATGTCTCAGATGACGAAGAACAACCCAAACGACAAAGACTATCATCCTCTTCCTCTAATTTGCCAAAACGACATCTGCCTTTGCCGTCTCCTCCTTTATTCCACCAAACGCAATCTCCCATTCCTGGAAGTTACATATCAAAACGACAACGTGCTCTGATGGGTCCCACCCCTGTCCCTCTTCCTGATTCCGTTCCTGTTCCATCTCCCTTCACGCTACCAGGTAGTATCTCAGTTACTGATGTACACCATAATATTTTGTCATTGTTGAAAAGTAAAGCAAAGGATCATCAAAGCCAAAACCTGATATCTGAAAAGCTATCTGAAACTTTATCCGGACATACTAATGCAGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTACTTGCGTCTGCTGGGATGGATCACACAATTTGCATATGGAATGTATGGAGCAGAAATCAGAAGAAAGCGTGTATGCTAAACTTCCACAATGCTGCAGTCAAAGATGTGAAATGGTCTCCGCAAGGCCACTTTCTACTTTCTTGTGGATATGATTGCACGTCAAGATTGGTCGATGTTGAAAAGGGATTGGAGACTCGGGTTTTCAGAGAAGATCAAATTGTTGCAGTTATAAAGTTCGATCCAGACAATTCAAATATCTTCCTTTCTGGAGGTTCAAAGGGCCATATCAAATTATGGGATGTCAGAACGGGCAAAGTAGTTCATAATTATAATCGAAATTTAGGTCCGATTCTCGATCTTGAGTTCACAATGAATGGGAAGCAATTCATTTCTTCTTGTGATGTATCTCAAAGTAATATCAGTGAGAACGCTATTATTGTTTGGGATGTTTCAAGGGAGGTACCATTGTCTAACCAGGTTTATGCAGAAGCTTATACATGTCCTTGCGTGAGGCTGCACCCATTTGATTCAATTTTTGTTGCCCAGTCAAATGGAAATTATGTTGCAATCTTTACTTCCACCCCACCTTACAGGCTCAACAAATATAGGCGATATGAGGGCCATGTGATCTCTGGGTTCCCAATCAAGTGCAATTTCAGCTTGGATGGGAAAAAACTTGCTTCTGGCTCTTCAGATGGTTCTATCTTCCTTTATGATTATCAGTCATCCAAAGTTGTGAAGAAAATCAAGGCCCATGATCAAGCATGCATAGATGTTGCCTTCCACCCCATTATACCTAATGTGATTGCTTCATGTTCGTGGGATGGAAGTATTTTGGTATTTGAGTAG 1266 0.4115 MDLLWNAYSNVSDDEEQPKRQRLSSSSSNLPKRHLPLPSPPLFHQTQSPIPGSYISKRQRALMGPTPVPLPDSVPVPSPFTLPGSISVTDVHHNILSLLKSKAKDHQSQNLISEKLSETLSGHTNAVNAIHWSSTHAHLLASAGMDHTICIWNVWSRNQKKACMLNFHNAAVKDVKWSPQGHFLLSCGYDCTSRLVDVEKGLETRVFREDQIVAVIKFDPDNSNIFLSGGSKGHIKLWDVRTGKVVHNYNRNLGPILDLEFTMNGKQFISSCDVSQSNISENAIIVWDVSREVPLSNQVYAEAYTCPCVRLHPFDSIFVAQSNGNYVAIFTSTPPYRLNKYRRYEGHVISGFPIKCNFSLDGKKLASGSSDGSIFLYDYQSSKVVKKIKAHDQACIDVAFHPIIPNVIASCSWDGSILVFE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00373 421 MobiDBLite consensus disorder prediction 9 50 - -
Vimu5g00373 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 248 IPR001680 GO:0005515
Vimu5g00373 421 Pfam WD domain, G-beta repeat 116 153 IPR001680 GO:0005515
Vimu5g00373 421 Pfam WD domain, G-beta repeat 166 195 IPR001680 GO:0005515
Vimu5g00373 421 Pfam WD domain, G-beta repeat 216 239 IPR001680 GO:0005515
Vimu5g00373 421 Pfam WD domain, G-beta repeat 342 378 IPR001680 GO:0005515
Vimu5g00373 421 CDD WD40 116 421 - -
Vimu5g00373 421 ProSitePatterns Trp-Asp (WD) repeats signature. 140 154 IPR019775 -
Vimu5g00373 421 SMART WD40_4 381 421 IPR001680 GO:0005515
Vimu5g00373 421 SMART WD40_4 242 288 IPR001680 GO:0005515
Vimu5g00373 421 SMART WD40_4 113 153 IPR001680 GO:0005515
Vimu5g00373 421 SMART WD40_4 200 239 IPR001680 GO:0005515
Vimu5g00373 421 SMART WD40_4 337 378 IPR001680 GO:0005515
Vimu5g00373 421 SMART WD40_4 158 197 IPR001680 GO:0005515
Vimu5g00373 421 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 25 421 - -
Vimu5g00373 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 387 IPR001680 GO:0005515
Vimu5g00373 421 SUPERFAMILY WD40 repeat-like 111 420 IPR036322 GO:0005515
Vimu5g00373 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515
Vimu5g00373 421 Gene3D - 94 421 IPR015943 GO:0005515
Vimu5g00373 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 154 - -
Vimu5g00373 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 162 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00373 Vimu-Chr5 3429309 3435420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00373 213 402 Miscellaneous Gene Families AT5G08390 20.942 4.04e-07 50.4