Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00371 ATGTCAGATGATCAGTTTCAAGCAAGTGGAAACTGGTGGGAATCTTCAAGAAACGTGAGGTTTGAGAGTGGTGAAACGCAGTCTTCTTCTTCTGGCCTCACCAACATGGGAAACTATGCTTGGCAGCAAGACATGGGTAGGTCTTCTTCCATGGATAACTCTGCCTCAGGAGGTTCCTCTGTGGTTTTCCATGACCAGAAGCAGCTTCAAGTTCAGCCACATCATGACTCATCAGCCACAAATCCCACCAATGACCATCCCAACTTGCACATGATGGGCTTGGGCCTCTCATCCCAAGCCATGGACTGGAATCAAGCATCTTTGCAGCTGTCGATGTTGCAAGAGAATTTGAGCTCTCCAGGCACCACGTTTCAGCAAGAAAGTGGGAATAACAATATTGCGTTGTCTCATCATCAACAAGTTCATTGGAGGCCAGAAAAATTGTTCTCTGCGGAGTCATCAAGCAATGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTCAGTCCTCAATATAGCTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTACTTTTCAGATGGATTATGTCGGTAACCCTTCTTCAATATTGCAAGGACTTTTGGGACATGAGAGCAATAACCAACAACCCCACCAAGGTGGTAGTGCTTCTTTTGAGAATCGTTCCATGAATTTTCCTTACTCAGCAACAAGCTATGGATTAAGCTCAAATATTGAGTTAGTTCCTTCTTGGTCAAAGGTGCCTCAGTTCTTAAGAGCTTCACCACCAAAACAACCACCCAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGATCCTGCTATAAAGGATGCTCGATCCACCTTCATCTCCTCTTTGCAAACCCCCTTCTCGCCATCAAATTTCGATGTTCAATCAAAGAATCTATCTGAAGTTAGAGACTCGGGTGTGGTGAAGAAAAGTGGGAGTGAAACAGCACCAAAAAGGCCAAGGAACGAAAACCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACTGCGTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAAGTCACCGTTTTAAGCACCCCCTATATGAAAACCGGTGCTCCCATACAGCATCAGCAGAGTTCTGGTAAATCGAAGGAATCTGAGGGTCCAAAGCAAGATCTTAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTACAGATAG 1368 0.451 MSDDQFQASGNWWESSRNVRFESGETQSSSSGLTNMGNYAWQQDMGRSSSMDNSASGGSSVVFHDQKQLQVQPHHDSSATNPTNDHPNLHMMGLGLSSQAMDWNQASLQLSMLQENLSSPGTTFQQESGNNNIALSHHQQVHWRPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDYVGNPSSILQGLLGHESNNQQPHQGGSASFENRSMNFPYSATSYGLSSNIELVPSWSKVPQFLRASPPKQPPNNQLHFTNNAPFWNANSDPAIKDARSTFISSLQTPFSPSNFDVQSKNLSEVRDSGVVKKSGSETAPKRPRNENPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKTGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00371 455 MobiDBLite consensus disorder prediction 400 423 - -
Vimu5g00371 455 FunFam Transcription factor bHLH123 family 345 407 - -
Vimu5g00371 455 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 120 436 - -
Vimu5g00371 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 403 IPR036638 GO:0046983
Vimu5g00371 455 CDD bHLH_AtbHLH_like 341 392 IPR045239 -
Vimu5g00371 455 MobiDBLite consensus disorder prediction 1 39 - -
Vimu5g00371 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Vimu5g00371 455 SMART finulus 346 390 IPR011598 GO:0046983
Vimu5g00371 455 MobiDBLite consensus disorder prediction 315 343 - -
Vimu5g00371 455 Gene3D - 345 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00371 Vimu-Chr5 3346356 3349543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00371 112 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.692 6.17e-75 238