Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01881 ATGGGAGGTGGATTTAGGGTGCTTCACTTAGTTAGGCCGTTTCTATCGTTTCTTCCCGAGGTTCAAACTGCTGATAGGAAAGTTCCATTTAGAGAAAAGGTCATATATACTGTGATCTCTCTCTTCATTTTCCTGGTTTGTAGTCAACTTCCTCTATATGGGATTCACTCAACAACAGGTGCGGATCCATTCTATTGGATGCGTGTTATTCTCGCTTCAAACCGGGGAACTGTCATGGAGCTTGGAATCACTCCCATTGTGACTTCTGGGCTGGTGATGCAACTTCTGGCTGGGTCGAAAATTATTGAAGTCGACAACAACGTACGGGAGGATCGAGCACTATTAAACGGAGCGCAGAAGCTTCTTGGTATTTTGATAGCTGTTGGTGAGGCTGTTGCCTATGTTCTTTCAGGGATGTATGGTAGTGTGGGACAACTTGGAGTAGGCAATGCCATCCTCATCATCATCCAGCTCTGTTTTGCGGGTATAATTGTGATTTGTCTAGATGAGCTTCTCCAAAAAGGATATGGTCTGGGTGAAAACATTATATGGAAGGCATTTAGCCCCACCACCATTAATAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTTATTGCTCTGTTCCATTTGTTGATAACTAGAACAGACAAGGTCCGGGCTCTTCGTGAGGCATTTTACCGCCAGAATCTTCCGAATGTGACAAATTTGCTTGCTACTGTCTTGATCTTCCTAATTGTAATATATTTCCAAGGTTTCCGTGTAGTCTTGCCTGTAAGGTCAAAGAATGCTCGTGGACAGCAGGGTTCATATCCAATCAAACTGTTTTATACCTCCAACATGCCCATCATTCTTCAGTCTGCTCTCGTTTCCAATCTCTACTTCATCTCCCAGCTGCTCCATCGTAAGTACAGTGGCAACTTCTTTGTAGATCTATTGGGAAAATGGAAGGAATCTGAATATGGAGGTGGTCAGTCTGTACCTGTCGGGGGAATTGCGTACTATATCACTGCACCTTCCAGCTTAGCTGATATGGCGGCCAATCCCTTCCATGCCCTGTTCTATCTCGTGTTTATGCTTTCTGCCTGCGCCTTGTTCTCTAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTGATGCCTGGACACCGTGAGTCAAACTTGCAGAAAGAACTGAATCGATACATTCCCACTGCTGCAGCATTTGGAGGCATGTGTATCGGTGCCTTGACAGTGTTGGCAGATTTTATGGGCGCCATTGGTTCAGGAACTGGAATATTGCTTGCAGTAACGATCATCTATCAGTACTTTGAGACATTTGAGAAGGAGAGAGCAAGTGAGCTTGGCTTCTTTGGTTTCTGA 1395 0.448 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVDLLGKWKESEYGGGQSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01881 464 PIRSF SecY_Sec61alpha 8 459 IPR002208 GO:0015031|GO:0016020
Vimu4g01881 464 Gene3D SecY subunit domain 9 462 IPR023201 -
Vimu4g01881 464 FunFam Transport Sec61 subunit alpha isoform 2 9 462 - -
Vimu4g01881 464 NCBIfam preprotein translocase subunit SecY 31 455 IPR002208 GO:0015031|GO:0016020
Vimu4g01881 464 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 18 458 IPR002208 GO:0015031|GO:0016020
Vimu4g01881 464 Pfam SecY 77 447 IPR002208 GO:0015031|GO:0016020
Vimu4g01881 464 SUPERFAMILY Preprotein translocase SecY subunit 10 454 IPR023201 -
Vimu4g01881 464 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Vimu4g01881 464 Pfam Plug domain of Sec61p 42 76 IPR019561 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01881 Vimu-Chr4 20684246 20686771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01881 1 464 Miscellaneous Gene Families AT2G34250 90.756 0.0 877
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01881 4 20684246 20686771 Vimu4g01881 4 20684246 20686771 ECH
Vimu4g01881 4 20684246 20686771 Vimu5g00524 5 5470185 5477195 PCT