Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01418 ATGGCTCCTAGGGACAGAACCACCGCACTCGCCGGACCCGGCCCAAGCCCAACACAGGCCCACAAAGAGATCCGCTACAGAGGCGTCAGGAAACGCCCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCGGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCACGAGCCTACGACGCCGCCGCTCGCGAGTTCCGAGGCGCCAAGGCCAAGACAAATTTCCCCACCCCTTCCGAACTTCTCGTAAACAACCACAGCAGTAGCAACAACAACAGCGCGCGTAGCCCTAGCCAGAGCAGCACCCTCGACTCTTCCTCCCCGCCGCCACCGCCTCCTCTGTTAAACCTCACGCTCACACCTCTCACCGCCTCGGTCCTCCCTGCCACACGCCCAGTCCTTTTCTGCGATGCTTTCGCGCGTGCGGACACAGTTATCGCCGTCGGGCGCCGCGACACCTGTGGCTTCGGACGCCCGGCCACCGATTTCCGTCGCAGTGACTCAAATTCCGAGCGACGTGCGCTCCTGGATCTCGATCTCAACGTGGCTCCTCTCCCAGAGGTTGCGTGA 588 0.6395 MAPRDRTTALAGPGPSPTQAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSELLVNNHSSSNNNSARSPSQSSTLDSSSPPPPPPLLNLTLTPLTASVLPATRPVLFCDAFARADTVIAVGRRDTCGFGRPATDFRRSDSNSERRALLDLDLNVAPLPEVA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01418 195 MobiDBLite consensus disorder prediction 76 121 - -
Vimu4g01418 195 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vimu4g01418 195 MobiDBLite consensus disorder prediction 83 109 - -
Vimu4g01418 195 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vimu4g01418 195 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vimu4g01418 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 147 - -
Vimu4g01418 195 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vimu4g01418 195 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vimu4g01418 195 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Vimu4g01418 195 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vimu4g01418 195 MobiDBLite consensus disorder prediction 1 35 - -
Vimu4g01418 195 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Vimu4g01418 195 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01418 Vimu-Chr4 14750908 14753651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01418 13 143 AP2-EREBP Transcription Factor Family AT3G15210 62.162 1.81e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu4g01418 AP2 1.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01418 4 14750908 14753651 Vimu2g00686 2 4141163 4141834 ECH
Vimu4g01418 4 14750908 14753651 Vimu4g01418 4 14750908 14753651 ECH