Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01405 ATGGTGGGCTCAGGAGCATCAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAAAAGGGTGTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCGAGAGTTCGAGGTGGTAATGGCTGCAAGGTTGGAGATGACAACGGTAGCTTGATGTTGATGTGGGAAGATGGTTTCTGCCGAGGAAGTGTTGATGGAGAGGATCCTGTGAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTGGGTACTGGGTAGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCTACAGAATGTGAACCGAATATCTCCAACTATTGGCAGAGTTCATTTGATGCTCTTCCTCCTGAGTGGACAGACCAGTTTGAGTCAGGCATTCAGACCATAGCTGTAATTCAAGCTGGGCATGGCCTTCTCCAACTTGGTTCTTGCAAGATTATTCCTGAAGACCTTCATTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCCCAACTCTTTTCTTCAACAAGGAACACTTCCTCTTCTACTTCTGTTCCTTCAAAACCATCTAGCATTCCAGTTAGGCCACCTCCACTCTTCAACTGGGGTCAGAGGCCACACAATTCTGCCACTTCCATGCTATCTTCACCCAATTTTCAACAACATGCAGCTAGACTTGGGTTCCCTAAAGATGAGGCAAACATGTTTCTGATTCCTCATGCATCATCTGAGAGTGCAAGAGTGGAGGACATGATGGGGGAGCATGAAAACGACATAAAATGGCCCAATGGCTTGTCTTTCTTCAATGCTCTCACAGGAAGAACAGATGATGCTAAGCTGTTGTTCAACCCTGATACATTGGGGAACAAACCAGTTGATCAAACTCAGCATCACCCTCTTACTCAAAATCCCAATTCAGATGCCTCCAACATGCAGAATGCTAATGCAACCAACCCAAATGAGTTCTTGAGCTTGGATAACAACCAAGATGATGCAAGGAAAATGGAAAAGTTCAAGAGAAGCTTCACTCTACCTGCAAGAGTAGCCTCATCATCTTCATCGACTTCAATGGATCACCATCAAACACAAGGTGTGCAGTTTAGGAATTCAGAAGGAGGTATGTACCCGGATGTCATGGAAACCTTTTTGGAGTGA 1236 0.4555 MVGSGASDRSKEAVGMMALHEALKRVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGSVDGEDPVRKAFSKMSIQLYNYGEGWVLGRLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSVPSKPSSIPVRPPPLFNWGQRPHNSATSMLSSPNFQQHAARLGFPKDEANMFLIPHASSESARVEDMMGEHENDIKWPNGLSFFNALTGRTDDAKLLFNPDTLGNKPVDQTQHHPLTQNPNSDASNMQNANATNPNEFLSLDNNQDDARKMEKFKRSFTLPARVASSSSSTSMDHHQTQGVQFRNSEGGMYPDVMETFLE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01405 411 PANTHER GB|AAF34833.1 1 411 IPR044170 -
Vimu4g01405 411 MobiDBLite consensus disorder prediction 315 353 - -
Vimu4g01405 411 MobiDBLite consensus disorder prediction 309 353 - -
Vimu4g01405 411 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 81 185 IPR025610 -
Vimu4g01405 411 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 75 IPR025610 -
Vimu4g01405 411 MobiDBLite consensus disorder prediction 372 396 - -
Vimu4g01405 411 MobiDBLite consensus disorder prediction 371 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01405 Vimu-Chr4 14579535 14581723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01405 20 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 33.333 2.43e-18 85.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01405 4 14579535 14581723 Vimu4g01405 4 14579535 14581723 ECH
Vimu4g01405 4 14579535 14581723 Vimu5g00512 5 5334473 5338564 PCT