Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01404 TTGCCCCCAGCATCTTCTTCTTCTTCTTCTTCATACTTGTCAGAATTCATAATGGAGATCAAGAGTACAGACAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAATCCGGTTGAAGTAGAAGATGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGCGGTGAGGGCTGTCTTGCAGAAGATGAGAGGAAGAAGGGTGGTGCAGGTGGTGGGAGAAGAGGCTCTACTGGAGGTGGAGTTTCTCCACCTTCTTGTCAAGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTTTGTGATGGTTGCAGGAATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGACGAAGCAAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAATGAACGGCGCCGGAAGAGCAATGCTGAGACTTGCAATGAAGGATGCAGCAGCAGCAAAGGACAGCACCCTGCAGAAAGCCTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCCACTTCAGATGA 624 0.5 MPPASSSSSSSYLSEFIMEIKSTDRRQVSIEKVRRDNPVEVEDEEEEEDESVAGGEGCLAEDERKKGGAGGGRRGSTGGGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSSSKGQHPAESLCRNADDWGRIQMNMARNSGYRSFHFR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01404 207 ProSiteProfiles Zinc finger SBP-type profile. 83 160 IPR004333 GO:0003677
Vimu4g01404 207 FunFam Squamosa promoter-binding-like protein 14 77 147 - -
Vimu4g01404 207 MobiDBLite consensus disorder prediction 24 39 - -
Vimu4g01404 207 MobiDBLite consensus disorder prediction 161 180 - -
Vimu4g01404 207 Coils Coil 136 156 - -
Vimu4g01404 207 MobiDBLite consensus disorder prediction 24 85 - -
Vimu4g01404 207 MobiDBLite consensus disorder prediction 164 178 - -
Vimu4g01404 207 Pfam SBP domain 86 159 IPR004333 GO:0003677
Vimu4g01404 207 Gene3D - 76 147 IPR036893 GO:0003677|GO:0005634
Vimu4g01404 207 SUPERFAMILY SBT domain 84 164 IPR036893 GO:0003677|GO:0005634
Vimu4g01404 207 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 166 IPR044817 GO:0003677
Vimu4g01404 207 MobiDBLite consensus disorder prediction 40 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01404 Vimu-Chr4 14560915 14561937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01404 20 200 SBP-box Gene Family AT3G60030 42.784 5.89e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu4g01404 SBP 1.3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01404 4 14560915 14561937 Vimu2g00675 2 4067301 4068823 ECH
Vimu4g01404 4 14560915 14561937 Vimu5g00520 5 5396372 5397470 ECH
Vimu4g01404 4 14560915 14561937 Vimu4g01404 4 14560915 14561937 ECH
Vimu4g01404 4 14560915 14561937 Vimu5g00520 5 5396372 5397470 PCT