Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01154 ATGTCCAACACTCTGCAACAACAAAATCCAACTCTCCAATCCAAACCTCTCGATCCGCCTGCCAAGCCTTCCCGTCCTGGCCACCGGAGATCAGTATCGGCTGGAGCTCCGTTAATCTACTCCGGTGGCGGCTCCTCACTGCTTCCCAGTGGGAATATCTGCCCCTCGGGGAAGATCCTCAAACCGGTGCTGCCCTCCCGTGGACCCAACCGGACAGATGTTCTTGGCTCGGGCACTGTAAACTACGGCCGCGGCAGCATAATACGTGGTGGCTCCGGCACCTATCCTGTGCCGGTGGCTGTGCCTGCATCACCACTCACGGTGAAACGTGCGCTAGGAGGGTCTGATCCTGAGGAGTTGAAGAGGATAGGGAACGAGCTGTACAGAAGCGGGAACTTCTTAGAGGCGTTGGCATTGTACGATCGTGCTGTGGCCATCTCACCTGGTAATGCGGCGTGCCGGAGCAACCGTTCAGCGGCACTCACGGCGCTGGGGAGGCTCGGGGAGGCCGTCAGGGAGTGCCACGAGGCTGTGAAATTGGACCCTGCTTATGCTAGAGCGCACAAGAGGCTCGCCTCTCTTTATGTAAGGTTTGGGCAGGTTGAGAATTCGCGGCGTCATTTATGTCTGTCAGGAATTCAAGAGGATCAGTCTGAGGAGCAGAAGCTGTTGTTGTTGGAGAAGCATTTGAATAGATGTGCGGAATCGCGGAAATTTGGTGATTGGAAGAGGGTGCTCAGGGAATCGGAGGCTGCTATTGCTGTTGGAGCAGATTTTTCGCCTCAGATTGTGGCTTGCAAGGCAGAAGCTTATTTAAAACTGCATCAACTTGAGGATGCTGAATCCAGTCTCTTGAACATTCCGAAGTTGGAAGGCTGTCCTGCAGCATATTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTTCCTTTTGTGTCAGCTCAGGTTGAGATGGCCTTGGGGAGGTTTGAGAATGCTGTTGTGGCAGCAGAAAAGGCCAGCACTTTGGATTACAGTAATGTCGAAGTTGGTAGGATTGTAAACGTTGTGAGAATGGTGGCAAGAGCTCGTTCAAGGGGCAATGATCTTTTCAGCTCTGGCAAGTTTTCTGAAGCTTGTTCTGCTTATGGAGAGGGTCTCAAATATGACAACTCCAACTATGTTCTATATTGCAATAGGGCAATTTGTTGGTCTAAACTTGGACTGTGGGAACAATCCGTTCAAGACTGCAACCAAGCTCTTAACATTCAACCAAATTACACCAAGGCTCTTTTTCGAAGGGCTGCATCAAATTCAAAGGTGAATCCACTGCTTGAAAGATGGGCAGATGTTATTAAAGATTATCAAGCCTTAAAACGCGAGCTTCCTAATGACAATGAAGTTGCTGAGTCTCTTCGTCGGGCTCAGTTAGCATTAGAAAAATCTCGGCTAGTGGTATATGGTACCAAGTTTGGAGTTGAAGTTGAGGAAATCTCAGCATTAGACAAATTTAAAGCTGCCATTGCTTCTGCTGGTGTTTCGGTAGTTTATTTCAAAGAGACACCAAACAAACTATGTGAGGAAATATCTCCATTTATAAACACCTTGTGTGTTAGATATCCCTCTGTTAAATTTATTAAGGTGGACGCAGAGGAGTGTATTGCAATAGCAAAAGCTGAGAACATAAGAAGTGTTCCAACCTTTAAAATTTATAAAAATGGAGAAAAGGTGAAGGAGATGATCCAGCCAACACATGAGTTATTAGAGGAATCAATAAAGAGAAGTAATAGTCTCTAG 1782 0.4753 MSNTLQQQNPTLQSKPLDPPAKPSRPGHRRSVSAGAPLIYSGGGSSLLPSGNICPSGKILKPVLPSRGPNRTDVLGSGTVNYGRGSIIRGGSGTYPVPVAVPASPLTVKRALGGSDPEELKRIGNELYRSGNFLEALALYDRAVAISPGNAACRSNRSAALTALGRLGEAVRECHEAVKLDPAYARAHKRLASLYVRFGQVENSRRHLCLSGIQEDQSEEQKLLLLEKHLNRCAESRKFGDWKRVLRESEAAIAVGADFSPQIVACKAEAYLKLHQLEDAESSLLNIPKLEGCPAAYSQTKFFGMVGEAYVPFVSAQVEMALGRFENAVVAAEKASTLDYSNVEVGRIVNVVRMVARARSRGNDLFSSGKFSEACSAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCNQALNIQPNYTKALFRRAASNSKVNPLLERWADVIKDYQALKRELPNDNEVAESLRRAQLALEKSRLVVYGTKFGVEVEEISALDKFKAAIASAGVSVVYFKETPNKLCEEISPFINTLCVRYPSVKFIKVDAEECIAIAKAENIRSVPTFKIYKNGEKVKEMIQPTHELLEESIKRSNSL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01154 593 MobiDBLite consensus disorder prediction 1 15 - -
Vimu4g01154 593 FunFam TPR repeat-containing thioredoxin TTL4 484 591 - -
Vimu4g01154 593 Gene3D Tetratricopeptide repeat domain 115 479 IPR011990 GO:0005515
Vimu4g01154 593 SUPERFAMILY Thioredoxin-like 398 589 IPR036249 -
Vimu4g01154 593 Pfam Tetratricopeptide repeat 117 150 IPR013105 -
Vimu4g01154 593 CDD TRX_family 499 584 - -
Vimu4g01154 593 SMART tpr_5 117 150 IPR019734 GO:0005515
Vimu4g01154 593 SMART tpr_5 389 422 IPR019734 GO:0005515
Vimu4g01154 593 SMART tpr_5 355 388 IPR019734 GO:0005515
Vimu4g01154 593 SMART tpr_5 151 184 IPR019734 GO:0005515
Vimu4g01154 593 SMART tpr_5 309 342 IPR019734 GO:0005515
Vimu4g01154 593 MobiDBLite consensus disorder prediction 1 36 - -
Vimu4g01154 593 SUPERFAMILY TPR-like 112 429 IPR011990 GO:0005515
Vimu4g01154 593 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 45 588 IPR044534 -
Vimu4g01154 593 Gene3D Glutaredoxin 484 592 - -
Vimu4g01154 593 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Vimu4g01154 593 Pfam Thioredoxin 497 587 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01154 Vimu-Chr4 10174802 10177521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01154 129 202 Glycosyltransferase AT3G04240 33.784 1.64e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01154 4 10174802 10177521 Vimu4g01154 4 10174802 10177521 ECH
Vimu5g00523 5 5464433 5466571 Vimu4g01154 4 10174802 10177521 PCT