Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00497 ATGGATAGAAGAGTCTCCTCCACCATCAATATTGCTAATGATGAAGCAGAATCCTTCTATGATGAGAGTCATGTCTCTGCTGTCCTTGGCTACATAAAGCAAATGCTGATGGAAGAGGACACAGAAGAAAAGTACAGTATGTTCCATGATTCCTTAGCTCTCCAACATACTGAGAGATCATTCTATCAGGTTATCACTCACCAGAAATCTTCTTCCCCTTCTTCCACACACCATCATCATGTTCACAGTAACCCCAGTTCCAGAGTGGAGAGCCCTGAGCAAAATGTCTCTGGTTGCTCCAGTGATTATAGTACTGGTAGTTCTGGCAGTACATCCATCTCCTCTGATTCTCAGTGGAGTGTCGACTATAACACCCCCCCACTGCCAAACACTTTTACCTTTCCTGATAGCTTTGCTTTCCACTCAAATTCAACCTCCACCACTCAATCTTCCACGAATACTAGATTTGGATTCTTAGATAATAATACCCTTCTTGATTCTGCATTTCAAGAGCAATTCAAGAGAGGTCTAGAGCAAGGTACCAGCTTCCTTCCTAAACATACTCCGTTCATTGTCGACACGGACAGCACAGCCTTTTCAGCGGTTCCAGCTGTGGTAATTAAGACAGAAACAGAAGAAAGTTTTGAAGAAGAGCATTTTCTGTCTGTGTCAAGAAGGAGAAATCGGGACCAGGAAGAGTACGAAGCAGATGGGAGAATCAGGAAGACATCGGCAACGTACGTGGATGAAAGTGAGCTATCTGAATTGCTTGATAAAGTAGTGCTAGGCACTGGTTTAGGAAAACGGGTTCCTTCTGACACAGCCCTTTACCAAAATGATGAAACATTCTTATTAGCAAACATGTTTGGTGGGGAGGTCAGGAAAAGTGACGAGGAGGTTGTGGATCTGAGAGCACTATTGATGCTTTGTGCACAAGCTGTTGCTTCTGATAGTCCTTCATTTGCAAAGCAACTATTAAAGCAGATTAAGCAGCATTCTTCTCCAATAGGGAATGATACTCAGAGGCTTGCACATTACTTTGGAAACGCCCTTGAAGCATGCTTGGATGGAACCGGTTTTCAGGTTTATAGTGTTCTATCCTCCAAAAGAATCTCTGCCAAAGACATGGTAAAAGCTTACTGTGCATATGCTTCAGTGTGCCCGTTTGAAAAGATTACAATAATTTTTGCCAACAAATCAATTTGTTTTCAATCTGAGAATGCAGAAACTGTTCATGTCATAGACTTTGGTATCCGCTATGGCTTCAAGTGGCCTTCACTGATCAGCATCCTATCAAAACGTCCTGGTGGACCACCCAAGCTTCGCATCACGGGTATAGATCAGCCACAGCCAGGTTTCAGGCCAGAGGAAAGGGTGCTGGAGACGGGGCGTAGACTTGAACATTATTGCAAGCGTTTCAATGTTCCGTTCGAGTTCAATGCTATTGCAAGAAAATGGGACACCATCAGATTTGAGGACCTCAAGGTAGAGAAAAACGAATTTGTGGCTGTGAACTGCATGTTTGAGTTGGAGCATCTACTTGACGAGTCTGTGGTGTTGGATAATCCAAGGGAAGCTGTTTTGAGGTTGATTAAGAAGGCAAATCCTGACATATTTGTGCACAGCATTGTGAACGGCTCCCATGATGTGCCATTCTTTGTGTCACGGTTCCGAGAGTCTCTCTTCCACTACTCTGCAATGTTTAACATGCTTGAAACCAACCTTGATCGTGAAGATCCTACGAGGTTGATGTTTGAGAAGGAGTTGTTTGGACGGGAGATCATGAACATCATAGCTTGTGAAGGTTGTGAGAGGGTTGAGAGGCCACAAACATACAAGCAATGGCAGCTTCAAAACATGAGAATTGGGTTTCGGTTACTTCCTTTGGATCAACGAGTCATTGACAGAATAAAGAACAGGTTGAGACAGGATGCGCACGACACCAATTTCATGCTTGAGGTGGATGGTGGTTGGGTGCTACAAGGTTGGAAGGGTCGAATTCTGCATGCTTCCTCTTGTTGGGTTCCGGCATAG 2034 0.4405 MDRRVSSTINIANDEAESFYDESHVSAVLGYIKQMLMEEDTEEKYSMFHDSLALQHTERSFYQVITHQKSSSPSSTHHHHVHSNPSSRVESPEQNVSGCSSDYSTGSSGSTSISSDSQWSVDYNTPPLPNTFTFPDSFAFHSNSTSTTQSSTNTRFGFLDNNTLLDSAFQEQFKRGLEQGTSFLPKHTPFIVDTDSTAFSAVPAVVIKTETEESFEEEHFLSVSRRRNRDQEEYEADGRIRKTSATYVDESELSELLDKVVLGTGLGKRVPSDTALYQNDETFLLANMFGGEVRKSDEEVVDLRALLMLCAQAVASDSPSFAKQLLKQIKQHSSPIGNDTQRLAHYFGNALEACLDGTGFQVYSVLSSKRISAKDMVKAYCAYASVCPFEKITIIFANKSICFQSENAETVHVIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGFRPEERVLETGRRLEHYCKRFNVPFEFNAIARKWDTIRFEDLKVEKNEFVAVNCMFELEHLLDESVVLDNPREAVLRLIKKANPDIFVHSIVNGSHDVPFFVSRFRESLFHYSAMFNMLETNLDREDPTRLMFEKELFGREIMNIIACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRVIDRIKNRLRQDAHDTNFMLEVDGGWVLQGWKGRILHASSCWVPA 677
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00497 677 MobiDBLite consensus disorder prediction 66 120 - -
Vimu4g00497 677 MobiDBLite consensus disorder prediction 87 120 - -
Vimu4g00497 677 MobiDBLite consensus disorder prediction 66 80 - -
Vimu4g00497 677 Pfam GRAS domain family 303 674 IPR005202 -
Vimu4g00497 677 ProSiteProfiles GRAS family profile. 294 675 IPR005202 -
Vimu4g00497 677 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 211 664 IPR005202 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu4g00497 Vimu-Chr4 3611069 3613102 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00497 28 677 GRAS Transcription Factor Family AT1G07530 46.772 0.0 594
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu4g00497 GRAS 9.1e-109 CL0063
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00497 4 3611069 3613102 Vimu4g00497 4 3611069 3613102 ECH
Vimu4g00497 4 3611069 3613102 Vimu5g02101 5 32689134 32691371 PCT
Vimu5g02102 5 32693423 32696097 Vimu4g00497 4 3611069 3613102 PCT