Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00496 ATGGATCCAAACACTGTCATGAGCGGCTACGAGTTTGATGAGTGGGATTTCAATGGACACTACACGAACCTCCTCACGGATCCTTTTTTCTCTCAGTCCGATGTGGGCCCACCTGGGTTTTCTCCAAATACAATTTTAAACTCCGACCCGCTCGTTTCATCCTCCGCCGACTCCGCCGCTACGGTGGCTACGGTTGAGGAAGACACTGATTTTTCAGAAACCTTCAAGTTCATAAGTCAAATTCTCATGGAAGAGAACTTTGAACAGAAACCTTGCATGTGCTATGACCCTTTGACTCTTCAACACACTGAGAAATCATTCTACGATGCTTTGGAATTGGAACCGCCACTGCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCCGATGGCAATTCTTCCAATTCCACTACTGATTCAGCCAATTCTCACGACTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGGTGGTGGTGAGGCTTTTCATTCCTCTACCCACGCGCCCTCTTTCTTTGTTCCTCCGTCTGCTTTGACTAAAATTAACGATGGAACCCTGGATATGGATTCTTCTGTGAGCAAGCTCTTGGCTGAAAATATTTTCAATGATGCAGAATCTATGTTGCAGTTTAGGAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCAGAGACCTCAGCTTTTCACTGGGTTGGAGAGCGCCACGGTTTCTGCGGAACCAAAGGTAGGAGGGGAATTAACCGTTAAGCTTGAGAATTCAATAGGGGTGAAGAGTAGAAAGAATCACGCGCGCCAAGATGAAGAAGACGGAAGAAGCAACAAACACTCTGAGGTTTGTGTTGATGAGGAGAATGAAATATCTGAAATATTTGATAAGGTATTGCTTAGTGTTGAAAATGTGCCACTTTGTGCTGGTAAGAATGTATCTGTGGCAGTGGGAGACAGTAACGCAAAGCTGAGTGAGCAATCACCTTCGGTTGATGTAGGGAAGGTCCGTTCCAAGAGGCAAGGGAAGAAGAAGGAAACAGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGCGTCTGCCAGTGACAACAGGACTGCTAATGAACTACTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGAGATGCCTCACAAAGGTTGGCTCATTATGTGGCCAATGCTTTGGAGGCTCGCTTGGTTGGTGCCGGAACTGGAACACAGATATTTTATATGAGCTACAGGAACTTCACTACTACTGATTTCCTGAAAGCGTACCAAGTTTTCATATCTGCCTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAAATGATTATGAAAACAGCAGAAAAGGCAGAAACTCTTCATATTATTGACTTTGGTATCTTGTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAGTAGAACAGGAGGGCCTCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCAGGCTTTCGCCCATCCGAAAGAATCGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAACCGATTCAATGTTCCCTTTGAGTACAAGGCCATACCATCAAGAAACTGGGAAACCATTCAAATTGAAGACCTTAAGATTGAGAGCAACGAGGTGCTTGCTGTCAACTGTCTGGTAAGGTTTAAGAATTTGCTCGATGAATCAATTGAAGTGAGCAGTCCCAAAAATGCTGTTCTGAAATTAATCAGGAAGATGAATCCGCATATTTTTGTTCAATCCGTGGTAAATGGATCTTATAATGCCCCTTTCTTTGTCACGCGCTTCCGGGAGGCACTGTTCCATTATTCTTCAATTTATGATATGTTTGATACTCTGGTATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTGGGTCGGGAAATCATGAATGTTGTAGCATGTGAAGCTCTTGAAAGGGTTGAGAGGCCTGAAACATACAAACAATGGCAGGTTAGGAATACTAGAGCTGGTTTTAGGCAGCTACCACTGGACAAGGAGTTAATGGCCAAATTTAGGGACAAGTTAAGGGAATGGTATCACAAGGATTTTGTCTTTGATGAAGATGGCGGCTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGGTTCATCTTGTTGGGTGCCAGGATAA 2163 0.4443 MDPNTVMSGYEFDEWDFNGHYTNLLTDPFFSQSDVGPPGFSPNTILNSDPLVSSSADSAATVATVEEDTDFSETFKFISQILMEENFEQKPCMCYDPLTLQHTEKSFYDALELEPPLPLSPNQHPLESPDGNSSNSTTDSANSHDLKPSSPNTPVSGGGEAFHSSTHAPSFFVPPSALTKINDGTLDMDSSVSKLLAENIFNDAESMLQFRRGLEEASKFLPQRPQLFTGLESATVSAEPKVGGELTVKLENSIGVKSRKNHARQDEEDGRSNKHSEVCVDEENEISEIFDKVLLSVENVPLCAGKNVSVAVGDSNAKLSEQSPSVDVGKVRSKRQGKKKETVDLRTLLVLCAQAASASDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGAGTGTQIFYMSYRNFTTTDFLKAYQVFISACPFKKFAHFFANKMIMKTAEKAETLHIIDFGILYGFQWPILIKFLSSRTGGPPKLRITGIEYPQPGFRPSERIEETGRRLAKYCNRFNVPFEYKAIPSRNWETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPKNAVLKLIRKMNPHIFVQSVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLVSRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRDKLREWYHKDFVFDEDGGWMLQGWKGRILYGSSCWVPG 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00496 720 MobiDBLite consensus disorder prediction 125 160 - -
Vimu4g00496 720 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 277 711 IPR005202 -
Vimu4g00496 720 ProSiteProfiles GRAS family profile. 336 718 IPR005202 -
Vimu4g00496 720 MobiDBLite consensus disorder prediction 114 167 - -
Vimu4g00496 720 MobiDBLite consensus disorder prediction 257 276 - -
Vimu4g00496 720 Pfam GRAS domain family 345 717 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00496 Vimu-Chr4 3603608 3605770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00496 74 719 GRAS Transcription Factor Family AT1G07530 50.000 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu4g00496 GRAS 4e-112 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00496 4 3603608 3605770 Vimu5g02102 5 32693423 32696097 PCT
Vimu5g02103 5 32698799 32700802 Vimu4g00496 4 3603608 3605770 PCT