Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00686 ATGGCCCCCAGGGACAAGACCACTGCCGTTAAGGTTAACACTAACGCTAACGCCGCCGGAGTCAAGGAGGTGCATTTTCGGGGAGTCAGGAAGAGGCCCTGGGGAAGATACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTAGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCTGCTCGGGAGTTTCGCGGCCCCAAGGCCAAGACCAATTTCCCTCCTCCATCCGATAGTAATGTCAAGAACGCCAGCCCCAGCCAGAGCAGCACCGTCGAGTCTTCCAGTCGCGACCGCGATGTCGCCGCCGATTCCTCCCCTCTGGACCTCAACCTTGCCCCGGCTGCCGTCTCCGCTGCCGTCTCCGCTGCCCGCTTCCCCTTCCAGCACCAGTTCCCCTTTTTTCCGCCTGCCAACCAGGTTTTGTACTTAGACGCCGTCATGCGCGCCGGTTTGGGCGGCCCGCGTGGGTTTGGGTTTGGCTACAATCAGCATCCCGTTGCGGCGAAGGAGTTCCACGCGACGACCAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCACAACGAAGGCGATGTGAAGGGGAGCGGTTCCAGAATTTTCGATCTCGACCTTAATAACCCTCCTCCACAGGAGATGGCCTGA 672 0.6161 MAPRDKTTAVKVNTNANAAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPSDSNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAAVSAARFPFQHQFPFFPPANQVLYLDAVMRAGLGGPRGFGFGYNQHPVAAKEFHATTSDSDSSSVIDLNHNEGDVKGSGSRIFDLDLNNPPPQEMA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00686 223 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vimu2g00686 223 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vimu2g00686 223 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Vimu2g00686 223 MobiDBLite consensus disorder prediction 198 223 - -
Vimu2g00686 223 MobiDBLite consensus disorder prediction 72 111 - -
Vimu2g00686 223 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vimu2g00686 223 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vimu2g00686 223 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vimu2g00686 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 168 - -
Vimu2g00686 223 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Vimu2g00686 223 MobiDBLite consensus disorder prediction 81 104 - -
Vimu2g00686 223 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vimu2g00686 223 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00686 Vimu-Chr2 4141163 4141834 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00686 22 104 AP2-EREBP Transcription Factor Family AT5G44210 75.904 3.55e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu2g00686 AP2 1.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00686 2 4141163 4141834 Vimu2g00686 2 4141163 4141834 ECH
Vimu4g01418 4 14750908 14753651 Vimu2g00686 2 4141163 4141834 ECH
Vimu5g00635 5 7473636 7474217 Vimu2g00686 2 4141163 4141834 ECH