Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00675 ATGGATGAAAGTTGGAGTGAGGGGAAAAGGAGAATGAATTACAAGGAGGAAGAAGATGATGATTATGAGGAGGAGGAAGAGGAGGAGGGAAATGAGTACGGAGAGGACGGTAGGAAGAAGAGGGTGGTCACTAACAAGAGAGGCTCCAAAGCTGGAGGCTCAATGCCACCTTCATGTCAAGTTGATGGTTGTAATGCCGATCTCAGTGATGCTAAGCCCTACCACAGGCGTCACAAGGTTTGTGAGTACCATGCCAAGGCTCCTGCAGTGCTCATTGCAGAGCAGCATCAACGGTTTTGCCAACAATGCAGTAGGTTTCATGAGCTATCAGAATTTGATGAATCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAAAGGCGTCGCAAGAATGCATCTGAATATGGGCATTGA 420 0.469 MDESWSEGKRRMNYKEEEDDDYEEEEEEEGNEYGEDGRKKRVVTNKRGSKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEQHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASEYGH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00675 139 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Vimu2g00675 139 MobiDBLite consensus disorder prediction 114 139 - -
Vimu2g00675 139 MobiDBLite consensus disorder prediction 1 63 - -
Vimu2g00675 139 FunFam Squamosa promoter-binding-like protein 14 50 120 - -
Vimu2g00675 139 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 134 IPR044817 GO:0003677
Vimu2g00675 139 MobiDBLite consensus disorder prediction 1 17 - -
Vimu2g00675 139 Gene3D - 49 120 IPR036893 GO:0003677|GO:0005634
Vimu2g00675 139 SUPERFAMILY SBT domain 57 136 IPR036893 GO:0003677|GO:0005634
Vimu2g00675 139 PIRSF SBP 6 139 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vimu2g00675 139 Pfam SBP domain 59 132 IPR004333 GO:0003677
Vimu2g00675 139 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00675 Vimu-Chr2 4067301 4068823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00675 59 136 SBP-box Gene Family AT2G33810 74.359 1.51e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu2g00675 SBP 5.6e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00675 2 4067301 4068823 Vimu2g00675 2 4067301 4068823 ECH
Vimu2g00675 2 4067301 4068823 Vimu5g00520 5 5396372 5397470 ECH
Vimu4g01404 4 14560915 14561937 Vimu2g00675 2 4067301 4068823 ECH
Vimu5g00520 5 5396372 5397470 Vimu2g00675 2 4067301 4068823 ECH
Vimu11g03619 11 58099595 58101408 Vimu2g00675 2 4067301 4068823 PCT