Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01144 ATGAAACCAAACTTTGATCTTGAAGTTGAGGCACATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCCACACCACAAATCCAATTGGGAGTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGTGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCTTCTCAAACCACAGCAGCGACCATATCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCCCACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTAAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTGCATGGTTCCTTTAGGTCCTTAGGAGTAAAGGCACACTCTTCACTGCACCATGGTTTCTCACCAACAATGAGGCCTCCTGAGATAAAAACCAACGCAAGATTTGATCAAGGGTATGTTGGCATCCCCATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTCGAGGCTGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAGATTTGAGTTTTACTGGGGTTAATCCACCTGTAGACATAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4289 MKPNFDLEVEAHAEYESEVSSQVASNVSIQETSIGPCSDSLTNISHTTNPIGSHPNSDAISLDLTLNFKNSEPVGRDSIGFSFSSTSESSNEPASQTTAATISRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYANLASLPLHGSFRSLGVKAHSSLHHGFSPTMRPPEIKTNARFDQGYVGIPIFLEDDESDLLWPGSFRQVVEAGDSHQNFILTGSSDLSFTGVNPPVDIENSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01144 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Vimu1g01144 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Vimu1g01144 257 FunFam Zinc finger protein 2 83 152 - -
Vimu1g01144 257 Gene3D Classic Zinc Finger 84 149 - -
Vimu1g01144 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 56 181 IPR044246 GO:0009788
Vimu1g01144 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01144 Vimu-Chr1 8744124 8744897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01144 88 257 C2H2 Transcription Factor Family AT1G66140 51.244 2.79e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g01144 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01144 1 8744124 8744897 Vimu1g01144 1 8744124 8744897 ECH
Vimu6g01878 6 17002160 17005383 Vimu1g01144 1 8744124 8744897 PCT