Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01139 ATGGTGTTGTCGTGGACCAGAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAAGAGTTGAGTTCCGGTAGCGATTTGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCCGTGACGATGTCCACGGGGATAACCTACGACAGAGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTTACGAAGACGGAGTTGAACAGCTTCGAGATGATCCCGAACCACTCCATTCGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCTACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTGTCTCCGTACGAGGTTGCTGACACGTGTACGAAAATCCTGTCGGCGGCGCAGAACGGGGACGAGAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCGTGGGGGAAGGAGAGTGAGAGGAACAAGAGATGCATAGTGGTCAACGGTGCTGCTCTAGCACTGGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCGTTGACGTGGATGCGTCCTCTTTCAGAAGATGGTAGATCGGTGTTGGGGTCAGTGAGTTCTATTGGTTGCATGGTTTGGTTCATGAACGGTAAACAATTGGCGACAAGGCAGAACGCTGCTTTGTTGCTGAAGGAAATGCGTGTTGAGGCGTTGGTGAAATGTGAAGGGGTTTTGGAAGCTTTGGTTAACATGGTTAAGGAGGCAGTTGGTAGTGCTTCCTCGAAGGCATGTTTGTCAACGATTTTTAAGTTGGTTAATTCATCAAATAGGGGTAGGAGTTGCGAGAGATTGGTGGAGTTGGGTTTGGTTTCGGTGTTGTTGGAGGTTGTTGTTGATGCGGAGAAAGGCGTGTGTGAGAAGGCTTTGGGGGTATTGGATTGTCTTTGCGATTCTAAACAAGGGTTGCAAATGGCTAAAAGTAACGCTTTGACTTTGCCTGTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAGTTGAGTTCCAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGAGATGTTGGTCGAGGCTCTTCAAATTGGAGTATTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGCTGAGGGCACCAAAGAGAAAGCTACTGAGTTGTTGAAATCATTGAATGGTTGCAGGAGCAAAGCTGAGTGTGTGGACTCCTCCTTCGATTTCAAGCACTTGAAGAAACCCTTCTAA 1302 0.4962 MVLSWTRGRVFRRARKGKELSSGSDLEIEIAIPTHFRCPVTLDMMKDPVTMSTGITYDRDSIEKWIESGNRTCPVTKTELNSFEMIPNHSIRRMIQDWCVEHRSYGIERIPTPRIPVSPYEVADTCTKILSAAQNGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSVSSIGCMVWFMNGKQLATRQNAALLLKEMRVEALVKCEGVLEALVNMVKEAVGSASSKACLSTIFKLVNSSNRGRSCERLVELGLVSVLLEVVVDAEKGVCEKALGVLDCLCDSKQGLQMAKSNALTLPVVIKKLLRVSELSSSFAVSVLWKVCDKTEEEMLVEALQIGVFHKLLVLLQVGCAEGTKEKATELLKSLNGCRSKAECVDSSFDFKHLKKPF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01139 433 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Vimu1g01139 433 SUPERFAMILY ARM repeat 125 410 IPR016024 -
Vimu1g01139 433 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Vimu1g01139 433 SUPERFAMILY RING/U-box 27 108 - -
Vimu1g01139 433 PANTHER WDSAM1 PROTEIN 29 420 IPR045185 GO:0061630
Vimu1g01139 433 CDD RING-Ubox_PUB 33 85 IPR045210 -
Vimu1g01139 433 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Vimu1g01139 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Vimu1g01139 433 Gene3D - 123 420 IPR011989 -
Vimu1g01139 433 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01139 Vimu-Chr1 8706316 8707617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01139 24 433 U-box Gene Family AT5G37490 45.084 3.30e-120 355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01139 1 8706316 8707617 Vimu1g01139 1 8706316 8707617 ECH
Vimu1g01139 1 8706316 8707617 Vimu1g01139 1 8706316 8707617 PCT