Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01122 ATGGTGGCTTTGGTTTCCCAAGACAACAACGTTGTTGCATTGGTTTCTCGTACAGGTAGAGAGTTACAACGCTACAGGAAAGGTCGTCGCCAAGTCGTGGGATGCATACCCTATAGATATAAAATTGTGGATCGAACCTCGTTGGAGGGACCAGAAGATTTAGAAGTTTTGGTCATCACTTCTCAAAAAGGCAAAGGGATGCTGTTTCCTAAGGGAGGTTGGGAATTGGACGAATCCAAAAAGGAGGCAGCTTTGAGAGAAACCATAGAGGAAGCAGGGGTTCGAGGCACTGTTGAGGGGAAATTGGGTAAGTGGAGTTTCAAGAGCAAGACTCATGATACATTTTATGAGGGCTACATGTTCCCTCTACTTGTCCAAGAGCAATTGGAGTTCTGGCCTGAGCAGAATTTTCGTCAAAGAACATGGATGAGCGTTTCTGACGCAAGGGAAGTTTGTCAACACTGGTGGATGAAAGAAGCTCTAGAGAGACTAGTAAACCGTCTCATGGCTCGGAAACTTGGTCGTGTGAGACAAATAGTAGGTTCTATACACTGCATAGGAGATGGCAATTCTGACTTGTAA 582 0.4519 MVALVSQDNNVVALVSRTGRELQRYRKGRRQVVGCIPYRYKIVDRTSLEGPEDLEVLVITSQKGKGMLFPKGGWELDESKKEAALRETIEEAGVRGTVEGKLGKWSFKSKTHDTFYEGYMFPLLVQEQLEFWPEQNFRQRTWMSVSDAREVCQHWWMKEALERLVNRLMARKLGRVRQIVGSIHCIGDGNSDL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01122 193 ProSiteProfiles Nudix hydrolase domain profile. 28 165 IPR000086 -
Vimu1g01122 193 FunFam Nudix hydrolase 17, mitochondrial 15 167 - -
Vimu1g01122 193 CDD Nudix_Hydrolase_9 31 158 IPR047198 GO:0016462
Vimu1g01122 193 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 14 168 - -
Vimu1g01122 193 Pfam NUDIX domain 55 163 IPR000086 -
Vimu1g01122 193 ProSitePatterns Nudix box signature. 72 93 IPR020084 GO:0016787
Vimu1g01122 193 SUPERFAMILY Nudix 24 168 IPR015797 -
Vimu1g01122 193 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 15 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01122 Vimu-Chr1 8556512 8557632 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01122 1 8556512 8557632 Vimu1g01122 1 8556512 8557632 ECH
Vimu6g01867 6 16873700 16874934 Vimu1g01122 1 8556512 8557632 PCT