Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01121 ATGAAAATGACAAAAAGGGGCATCTCAAACAGAGTAATCACAGTGGGTGTGTTTTTCTGCGTGATCCTGTTGTTCCCCAAGTTTTCGGAGTGTTCGAGCCCGAGCGCGCTTCTCTACAGCGGGTGCACGCAGCAACTGTACACCCCAAACTCGCCGTACCAGTCGAACCTGGACTCGCTACTCACATCGCTGGTGAACTCGGCCACGTACTCGTCTTATAACAACTTCACGGTGGTGGGGTCCACGCAGCAGGACGCGGTGACCGGCCTCTACCAGTGCCGCGGCGACCTCGCCATGCCGGACTGCGCCGCCTGCGTAGCGCGCGCCGTCACGCGCGCCGGCGATATCTGTCGTGGGACGTGCGGGGGAGCGGTGCAGCTCGACGGCTGCTTCGTGAAGTACGACAACGCGACGTTCCTCGGCGCACAGGACAAGACGGTTGTGCTGAAGAAGTGCGGGCCCTCGGTGGGGTACAACCCCGACGCCATGGGGAGCCGCGACGCCGTGCTTGCCGGGCTCGCGGCCACTGGAGGGAACTTCAGGGTTGGCGGGTCCGGCGGAGTCCACGGCATGGCGCAGTGCACCGGAGACCTGAGCTACGGCGAGTGCCAGGACTGCGTGGCGGAGGCCATCTCGCGGCTGAAGGCCGACTGCGGCACGGCGGATTACGGTGACATGTTCCTGGGGAAGTGTTATGCGCGGTACTCCACCGGCGGGGCCCACGGTGAATCGAAGGCCCACGGTAAGGCCCATCATCATGATCGCATGCTTGTTCTTCTCTTACTACCTCTCATGGGTTTGAAGTTCTGA 810 0.6247 MKMTKRGISNRVITVGVFFCVILLFPKFSECSSPSALLYSGCTQQLYTPNSPYQSNLDSLLTSLVNSATYSSYNNFTVVGSTQQDAVTGLYQCRGDLAMPDCAACVARAVTRAGDICRGTCGGAVQLDGCFVKYDNATFLGAQDKTVVLKKCGPSVGYNPDAMGSRDAVLAGLAATGGNFRVGGSGGVHGMAQCTGDLSYGECQDCVAEAISRLKADCGTADYGDMFLGKCYARYSTGGAHGESKAHGKAHHHDRMLVLLLLPLMGLKF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01121 269 ProSiteProfiles Gnk2-homologous domain profile. 140 240 IPR002902 -
Vimu1g01121 269 Gene3D - 34 139 IPR038408 -
Vimu1g01121 269 Gene3D - 162 238 IPR038408 -
Vimu1g01121 269 Pfam Salt stress response/antifungal 42 136 IPR002902 -
Vimu1g01121 269 Pfam Salt stress response/antifungal 184 237 IPR002902 -
Vimu1g01121 269 FunFam cysteine-rich repeat secretory protein 3 34 139 - -
Vimu1g01121 269 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 15 246 - -
Vimu1g01121 269 FunFam Cysteine-rich repeat secretory protein 60 160 238 - -
Vimu1g01121 269 ProSiteProfiles Gnk2-homologous domain profile. 35 139 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01121 Vimu-Chr1 8550629 8552302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01121 22 244 Receptor kinase-like Gene Family AT4G05200 25.833 2.92e-15 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01121 1 8550629 8552302 Vimu1g01121 1 8550629 8552302 ECH
Vimu6g01866 6 16867360 16868608 Vimu1g01121 1 8550629 8552302 PCT