Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00344 ATGCAATATCAGCAGCAGAAGAAAGTGGAGTCTTCACCAACTACAGGGTCTCTCCGCAAGCTTCAACAAACAGTACATGGTTCTAAGGCCTCTGCTACATTTGCAGTAACCACTGCATGCTTCAATACCAATACTGTTGATGACAGGAAATCAAGCTTCTTTGAGTTTAAACCACTCAACAGGTTGAATATGGTTCCTGCAGACTTCAATAACCATGTTATCAAACAATCAACTCAAGCAGAAGGTCTAGGAAAAGCACAATCATTTGTTTCCTCACCATTAGTTGAAAGTGAGATAGCAGTTCCTGCTAACGAATTAAGTCTATCATCACCTGTACAAATGGTTAGTTCTAGTCCTAGTGCTCCTGTTGATGTTGATTTGGATGACGTTAACCACAAAAGCAACACAGCTACTGGGCTTCAAGAATCACATGTTGAGGTTAGAGGCAATGGGATTTCAGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATACGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTGTTTGAACGCTCTCATGATGGTCAAATCGCAGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGGTACTATTATGTCTATTCAAGTAGAGAGATCCGATAAGGATTCTTCTTTGGCTGGCCTAGATGACAAAGCATCCTCCATGTATGGTCAGTTGTCCCATGCTGCTGAGCTCAACAGTGCTTCTGAGCCATCAACCATAGCAACAAACGATGATGGTTTAGAGGGTGTTGGGTTTGTGTCAAACAGGATTAGTGATGACAATGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCTGTAGTTAAACCTATCCGGGAGCCACGGGTTGTTGTACAGACTTTGAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCGGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCAAAGAATAGCAGCCATGACATGGCAGTAGCTGCAGCTGGACAGACAAGAATTAAGTTGGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGAATTAGCTCAGCTGCTGAACATAGATCAAACGCACAAGGGAAAATAATGCGCTCTGAATTTGGGAACACTCAAACTCACACAAATAATTCCAATTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTTCAGCTTTAAACCATGCCTCGTATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCACGAAGTTGA 1551 0.421 MQYQQQKKVESSPTTGSLRKLQQTVHGSKASATFAVTTACFNTNTVDDRKSSFFEFKPLNRLNMVPADFNNHVIKQSTQAEGLGKAQSFVSSPLVESEIAVPANELSLSSPVQMVSSSPSAPVDVDLDDVNHKSNTATGLQESHVEVRGNGISVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIAEIIYKGTHDHPKPQPSCRYSTGTIMSIQVERSDKDSSLAGLDDKASSMYGQLSHAAELNSASEPSTIATNDDGLEGVGFVSNRISDDNDDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSAAEHRSNAQGKIMRSEFGNTQTHTNNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSDGSALNHASYPCPQSMGRILMGPRS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00344 516 ProSiteProfiles WRKY domain profile. 331 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 114 437 IPR044810 GO:0003700
Vimu1g00344 516 Pfam WRKY DNA -binding domain 337 393 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 Pfam WRKY DNA -binding domain 161 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 Gene3D WRKY domain 321 397 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 Gene3D WRKY domain 152 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 MobiDBLite consensus disorder prediction 484 501 - -
Vimu1g00344 516 ProSiteProfiles WRKY domain profile. 155 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 SMART WRKY_cls 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 SMART WRKY_cls 336 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 MobiDBLite consensus disorder prediction 484 516 - -
Vimu1g00344 516 SUPERFAMILY WRKY DNA-binding domain 157 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 MobiDBLite consensus disorder prediction 1 23 - -
Vimu1g00344 516 FunFam WRKY transcription factor 150 220 - -
Vimu1g00344 516 SUPERFAMILY WRKY DNA-binding domain 328 396 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00344 516 FunFam WRKY transcription factor 33 323 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00344 Vimu-Chr1 2024862 2028716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00344 8 514 WRKY Transcription Factor Family AT4G26640 53.891 1.37e-164 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g00344 WRKY 1.2e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00344 1 2024862 2028716 Vimu1g00344 1 2024862 2028716 ECH
Vimu2g02424 2 19910450 19915583 Vimu1g00344 1 2024862 2028716 PCT