Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04849 ATGGTGAAATCGAATGAAAATGGTTCTGGTTCAGGTCCGGTGCCTCCGTTCTTGAAAAAGTGTTACGATATGGTGGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGATGGCGGCGACAGTTTCGTCATATCTGACACCACACAATTCTCCGGTTTTAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAATTTTGTTAGGGGTCAAAAGCAATTGTTGAAAAATATACGCAGAAGAAAACATCCACACGTTGCAGACCAACAAAAAGCATTGCCTCAGAATGACAATAGTGATGAACCATCCCAAGAGGTACCTCATCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCGCTGACCCAGGAGTTGGTCAAACTCAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGCGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTCGTGCAAAGCCCTGGGTTCCTGGTTCAATTGCTTCATCCAAAGGAAAATAATTGGCGGTTGTCTGAATCTTGGAATGTATTAGATCAAGATAAACAAGATGACAAGCCAATTGCTTCTGATGGGATGATAATAAAGTATACGCCACCTCTAGGTGAAAAACTCAAGCCTGTAGTTCCCCTACCTCCTGCTTTTGAAAAGCAATCAGAACCTGAGCTGGCTGCAGATGGGCTCAAAGACTTGTGCATTAGTTCCGAGTTCATGAAAGTGCTTATGGATGAAAAATTGAGTCCACTAGAAAACCATTCCCCATTTCTCCTACCAGATTTACATGATGACGGTTCGTGGGAACAGCTTTTCCTAGGCAGTCCTTTCCTGGGAAACATTGAAGATTCTAATAAAGAAAGTGAGGGGCGCACGGATAGTGGAATGGAAATGGAACCGACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAAAAAACTCGAGAATGA 1026 0.4279 MVKSNENGSGSGPVPPFLKKCYDMVEDRNTDSVIRWSDGGDSFVISDTTQFSGFRKIDTDCWEFANENFVRGQKQLLKNIRRRKHPHVADQQKALPQNDNSDEPSQEVPHHGLWKEVENLKSDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNVLDQDKQDDKPIASDGMIIKYTPPLGEKLKPVVPLPPAFEKQSEPELAADGLKDLCISSEFMKVLMDEKLSPLENHSPFLLPDLHDDGSWEQLFLGSPFLGNIEDSNKESEGRTDSGMEMEPTISETPNENSRTFESMIVEMEKTRE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04849 341 MobiDBLite consensus disorder prediction 83 109 - -
Vimu11g04849 341 SUPERFAMILY "Winged helix" DNA-binding domain 13 83 IPR036390 -
Vimu11g04849 341 Gene3D - 11 54 IPR036388 -
Vimu11g04849 341 SMART hsfneu3 13 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g04849 341 Pfam HSF-type DNA-binding 17 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g04849 341 Coils Coil 117 144 - -
Vimu11g04849 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 52 IPR027725 -
Vimu11g04849 341 MobiDBLite consensus disorder prediction 295 330 - -
Vimu11g04849 341 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04849 Vimu-Chr11 68307886 68310037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04849 14 292 HSF AT1G67970 43.092 1.87e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu11g04849 HSF_DNA-bind 2.2e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04849 11 68307886 68310037 Vimu11g04849 11 68307886 68310037 ECH