Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04828 ATGTCTTCCTCAAATTCCGCCCCTCAGCCCCACGCGCCGCTGCTCATCCCGCGTCCCGATGCCGCCACGGCCCGTCTCCCCGTCCTCGCACTCCTCCTCGGCCGCCGCGGCCATTCCGCTGTCGTCCGGGAGACCGCGGCCCGTGAGCTCGACGAGCGCCGCGCCGACTGGACATACTCGAAGCCGGTGGTGGCGCTCGACATGACATGGAACATGGCCTTTGTGGTGGTCTCGGCGGTGATGCTCGCCTGCACCGTCAAGGAGAACCCCAACACGCCGATCCGGTGGTGGATCTGCGGCTACGCCCTGCAGTGCCTCCTCCACGTGGCGCTCGTGTGGGTCGAGTACCGGAGGAGGAGCGACGCGCCCAGGGACGAGGAGTCTGGCGGCCACTTCGAATATGATGACGTCAACGACAGCGAAGAGGAGGATGCTGGAACCTCTGGGAGTTCCCCTTCCACTGGATTCACAAAACGATGCGCATCATTGAATACCATGGTTTCGTTACTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTCCTTGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTGTTGGCATGCTTGATTGGAATTGCCCTCTGTTGTTGTTTACCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAATCGGATCTCAGTGTACTTCCGAGATATAAATATCAAATGTTAAGCAACGAGGAAACACCTAGTAAAGGAGGTGGATCAATGATTCCCGTGGAGACGATCAGTGGTTACTCAATGAATGAACGAATACTTTCACCTGATGATGCAGAATGCTGTATATGCATCTCTTCTTATGAGGATGGAGCAGAGCTTCATGTTCTTCCGTGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTTTGCAAGTTCAATATTCTGAAGGGAAATGAACAGGTGTGA 1038 0.5289 MSSSNSAPQPHAPLLIPRPDAATARLPVLALLLGRRGHSAVVRETAARELDERRADWTYSKPVVALDMTWNMAFVVVSAVMLACTVKENPNTPIRWWICGYALQCLLHVALVWVEYRRRSDAPRDEESGGHFEYDDVNDSEEEDAGTSGSSPSTGFTKRCASLNTMVSLLWWMVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSVLPRYKYQMLSNEETPSKGGGSMIPVETISGYSMNERILSPDDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04828 345 CDD RING-H2_PA-TM-RING 293 335 - -
Vimu11g04828 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Vimu11g04828 345 PANTHER TARGET OF ERK KINASE MPK-1 34 343 - -
Vimu11g04828 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 343 IPR013083 -
Vimu11g04828 345 MobiDBLite consensus disorder prediction 122 155 - -
Vimu11g04828 345 Pfam Ring finger domain 293 335 IPR001841 -
Vimu11g04828 345 SUPERFAMILY RING/U-box 284 339 - -
Vimu11g04828 345 SMART ring_2 294 334 IPR001841 -
Vimu11g04828 345 FunFam E3 ubiquitin protein ligase RIE1 274 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04828 Vimu-Chr11 68224184 68227425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04828 4 344 C3H Transcription Factor Family AT1G68070 65.217 1.88e-162 456
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04828 11 68224184 68227425 Vimu11g04828 11 68224184 68227425 ECH