Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04827 ATGATGTCGTGGGAAGACGAGATTGTGATGCGCGATGTCACGAATGCGGGGCTTGTTGTCAGCGATCGCATTGGTCGCGAAGTTTCCTCTCAGCTCGACCTCGAAGAAGCTCTAGAAGCTTCCAGATACACCAGCCACCCTTATTCCACTCACCCCCGAGAGTGGCCCCCCTCCGTTGAGGTAGTGAATACCTGGGAGTTGCCCCCTGTGCTTATTGAAAGATACAATGCAGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCAGAAATAAGGAGGGCGTGGGCGTCTGTGGACAATTCATTGTTTCTTTGGCGTTTTGACAAGTGGGATGGCCAATGTCCTGAATTTAGTGGGGAGGAGCAAGCCATTTGTGCAGTTGGTCTTGCAAAATCAAAGCCTGGTGTTTTTGTTGAAGCTATCCAGTATCTTTTAGTTTTGGCAACACCTGTTGAGTTAATTTTAGTTGGAGTTTGTTGCTCTGGAGGAGCAGATGGTTCAGATCCATTTGCGGAAGTTACGTTGCAGCCTTTGCCAGAGCATACAATATCATCCGATGGGGTTACAATGACTTGTGTAGCATGTACTGACAAAGGTCGTATTTTTCTTGCTGGTCGGGATGGCCACATATATGAGGTTCTTTACTCAACTGGCTCTGGATGGCAAAAGCGCTGCCGAAAAATCTGCATGACTGCTGGTTTTGGAAGTGTCATTTCAAGATGGGTTATACCAAATGTATTTAATTTTGGAGCTGTTGATGCTATTGTTGAAATGGTTTTTGACAATGAGAGACAAATATTATATGCACGGACTGAAGAGATGAAGATTCAAGTTTATGTTATAGGACCAAATGGTGATGGGCCGTTAAAGAAAGTAGCTGAAGAAAAGAATCTTGTCAATCAGAGGGATGCACATTATGGAGCTAGACAATCAACTGGATCAAGAGTCTCAAGTCGATCTCCAAAGCCATCTATTATTTGCATCTCACCTTTATCTACTCTTGAATCAAAGTGGCTGCATCTGGTTGCTCTTTTATCAGATGGTAGAAGGATGTACCTATCTACCTCTCCTTCTAGTGGAAGCTTGACTGGATTTAACACCAATCATCGCAAGCCTAGCTGTTTAAAGGTTGTCACTACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGAGGTTTAACCTTTGGGGCAATGGCTCTTGCTGGTAGACCCCAGAATGAGGATCTCTCCCTAAAAATTGAGGCATCTTATTATTCTGCTGGAACTCTTATCCTCTCTGATGCGTCATCTTCAACCATGCCATCACTTCTTGTTTTGAGCAGGGATTCAAGCACACAGTCATTGCCATCAGGTAATTTAGGAACAAGTACCAGGAGTTCCCGGGCATTACGAGAGTCTGTATCTTCTTTACCTGTTGAAGGACGAATGCTTTCAGTGGCAGATGTTTTACCTTCACCGGATACTGCAGCTACTGTGCAGTCTCTGTATTCAGAAATTGAGTTTGGTGGTTATGAGAGCTCTATGGAATCATGTGAAAAGTTGTCTGGCAAACTCTGGGCTAGGGGAGATCTCTCAACCCAACACATACTTCCAAGAAGAAGGATTGTTGTCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTGGACATTCTAAGGCGGCTATTAGAATTGAACACTCCAAGGTCAGTTTTAGAAGATTTCTTCAATCGATTTGGTGCAGGTGAGGCTGCTGCAATGTGTTTAATGCTTGCTGCAAGAGTAGTGCATTCTGAAAACCTTATCAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGATCCAAGGGTTGTTGGGATGCCACAACTTGAAGGTAGTAATGCATTATCAAACACAAGAAGTGCTGCTGGGGGATTCAGCATGGGCCAGGTTGTTCAGGAAGCTGAGCCTGTTTTTTCAGCTGCACATGAGGGGCTCTGTTTGTGTTCATCTAGATTACTTTTTCCCCTATGGGAGCTTCCTGTAATGGTTGTAAAAGGCAATTTAGGTCCTTCAGGCACCCTATCTGAAAATGGCGTAGTTGTGTGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACAGAAACTCCGTTCTTTGGAGAAATTCTTAAGATCAAGAAGGAACCAGAGGAGGGGACTTTATGGCTGTGTAGCAGGACTGGGAGATCTGAGTGGTTCCATTCTGTATGGTAATGGTTCGACATTGGGTGCTGGTGATCGCAATATGGTCAGAAATTTATTTGGTGCGTATTCCAGAAATATGGAGTCCAATGGTAGCAGAACAAATAATAAAAGGCAAAGGTTGCCTTATAGTCCTGCTGAATTAGCTGCCATGGAGGTGAGAGCAATGGAGTGCATTAGGCAGTTGCTCCTTCGTTCTGGCGAAGCCCTATTTTTGCTTCAACTTCTTTCACAGCATCATGTCACTCGACTAATTCAGGGATTTGACTCTAGCCTTCAACAAACATTAGTTCAGTTGACATTTCATCAACTAGTTTGTTCTGAGGAGGGTGACCATATTGTTACTAGACTTATATCTGCTCTTATGGAGTATTATACTGGTCCTGATGGCAGGGGGACTGTAGATGACATTAGTAGGAGATTGCGAGATGGCTGCCCAAGTTACTATAAGGAGTCTGATTACAAATTCTTCTTAGCTGTGGAAGCGCTGGAGAGAGCTGCTACGACTATAGATGCCGAAGACAAGGAGAATCTTGCAAGGGAAGCATTTAATTCCTTGAGTAAAGTTCCAGAGTCTGTTGACCTACGAACTGTTTGCAAGCGTTTTGAGGATTTAAGATTTTATGAAGCTGTAGTGCGCTTACCTCTTCAAAAGGCACAGGCTCTTGACCCTGCAGGTGATGCTTATAATGATGAAATTGATGCAACTGTCAGAGAACAAGCACTCGCTCACCGTGAGCAGTGTTACGAGATAATTATCAGTGCCTTGCGATCTCTGAAAGGTGACACCTTGCAGAAGGAATTTGGCTCTCCCATTAATTCAACTGTTTCACAATCTGCCCTTGATCCATCCTCAAGGAAGAAATATATATGTCAAATTGTTCAACTGGGTGTCCAATCTCCAGACAGAATTTTCCACGAGTATCTTTACCAGGCTATGATTGATCTAGGTCTTGAAAATGAATTGCTAGAGTATGGGGGTCCTGACCTGTTGCCATTTTTGCAAAATGCTGGTCGTAAACCTATACACGAGGTTCGTGCTGTCACTGCAACAACTTCTCCAATGGGGCAATCAGGAGCACCAATGTCAACCAATCAAGTCAAGTACTATGAACTTCTGGCACGATATTATGTCTTAAAACGCCAACATATGCTTGCAGCTCATGCACTGCTTAGACTAGCTGAAAGGCGTTCAATTGATGGAGTTCCTACTCTTGAACAGAGGTGTCAATACCTAAGTAATGCAGTTCTACAGGCAAAAAATGCAACTAGTAGTGATGGTTTACTAGGTTCTGGTCGAAGTTCCATTGACAGTGGGTTTCTAGATTTGCTTGAAGGGAAGCTTGCAGTTCTCCGGTTCCAGATAAAAATCAAAGAAGAACTGGAGTCTATGGCTTCTAGGTCTGATGTTTTACCTAGCACGTCAGATTCTGCTGAAAATGGTGTAATCCCAGAGGGTAGTTCTACTGCCGATGCCAATTTTGTAAATGCAACAAGAGAGAAGGCAGAAGAGCTAGCTTCAGACGTTAAGAGTATTACCCAGTTGTATAATGAATATGCCGTTCCCTTTGGGCTCTGGGAGATATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGTGATACCGACAGCAGCATTGTCAGAGAGACGTGGGCTAGACTTATTGATCAAGCTATATCGAGAGGGGGCATTGCTGAAGCTTGCTCGGTACTAAAGAGGGTTGGGCCCCGCCTTTATCCTGGTGATGGAGCTGTTTTACCACTTGACATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTGAATTCAGGGGTCGAAGCCGTTGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCTGAACCCGTATTGAACGCATATGACCAATTGTTGTCGAATGGAGCTATTTTGCCATCCCCTAGTGTTAGATTACGTATGTTGAGATCAGTTCTAGTGGTGCTTCGAGAGTGGGCAATGTCTGCATATTCACAAAGGATGGGTAGCAGTGCTGCTGGGCATTCCTCCCTAATACTAGGTGGAGGATTCTCATCGGAACGTGCCATCGCTAGCCAAGGAATTCGGGACAAGATCACGAGTGCCGCAAACAGGTATATGACCGAAGTGCGGAGGTTAGCCCTTCCACAGAACCAAACAGAACACGTTTATCGAGGTTTCAAAGAACTTGAAGAATCGTTTATAAGCCAACATTCATTTGATAGATTTTGA 4464 0.4442 MMSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDLEEALEASRYTSHPYSTHPREWPPSVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEFSGEEQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCSGGADGSDPFAEVTLQPLPEHTISSDGVTMTCVACTDKGRIFLAGRDGHIYEVLYSTGSGWQKRCRKICMTAGFGSVISRWVIPNVFNFGAVDAIVEMVFDNERQILYARTEEMKIQVYVIGPNGDGPLKKVAEEKNLVNQRDAHYGARQSTGSRVSSRSPKPSIICISPLSTLESKWLHLVALLSDGRRMYLSTSPSSGSLTGFNTNHRKPSCLKVVTTRPAPPWGVSGGLTFGAMALAGRPQNEDLSLKIEASYYSAGTLILSDASSSTMPSLLVLSRDSSTQSLPSGNLGTSTRSSRALRESVSSLPVEGRMLSVADVLPSPDTAATVQSLYSEIEFGGYESSMESCEKLSGKLWARGDLSTQHILPRRRIVVFSTMGMMEIVFNRPLDILRRLLELNTPRSVLEDFFNRFGAGEAAAMCLMLAARVVHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSNALSNTRSAAGGFSMGQVVQEAEPVFSAAHEGLCLCSSRLLFPLWELPVMVVKGNLGPSGTLSENGVVVCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSTLGAGDRNMVRNLFGAYSRNMESNGSRTNNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDSSLQQTLVQLTFHQLVCSEEGDHIVTRLISALMEYYTGPDGRGTVDDISRRLRDGCPSYYKESDYKFFLAVEALERAATTIDAEDKENLAREAFNSLSKVPESVDLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAYNDEIDATVREQALAHREQCYEIIISALRSLKGDTLQKEFGSPINSTVSQSALDPSSRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQNAGRKPIHEVRAVTATTSPMGQSGAPMSTNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSIDGVPTLEQRCQYLSNAVLQAKNATSSDGLLGSGRSSIDSGFLDLLEGKLAVLRFQIKIKEELESMASRSDVLPSTSDSAENGVIPEGSSTADANFVNATREKAEELASDVKSITQLYNEYAVPFGLWEICLEMLYFANYSGDTDSSIVRETWARLIDQAISRGGIAEACSVLKRVGPRLYPGDGAVLPLDIICLHLEKAGLERLNSGVEAVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSPSVRLRMLRSVLVVLREWAMSAYSQRMGSSAAGHSSLILGGGFSSERAIASQGIRDKITSAANRYMTEVRRLALPQNQTEHVYRGFKELEESFISQHSFDRF 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04827 1487 Gene3D Nucleoporin, helical domain, central subdomain 1058 1155 IPR042537 -
Vimu11g04827 1487 FunFam Nuclear pore complex protein NUP155 1181 1417 - -
Vimu11g04827 1487 Gene3D - 532 884 - -
Vimu11g04827 1487 Pfam Nup133 N terminal like 55 544 IPR014908 -
Vimu11g04827 1487 FunFam Nuclear pore complex protein NUP155 895 1055 - -
Vimu11g04827 1487 Gene3D - 895 1055 IPR042533 -
Vimu11g04827 1487 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 875 1293 IPR007187 -
Vimu11g04827 1487 FunFam Nuclear pore complex protein NUP155 1058 1155 - -
Vimu11g04827 1487 Gene3D - 1181 1420 IPR042538 -
Vimu11g04827 1487 Coils Coil 701 721 - -
Vimu11g04827 1487 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 13 1479 IPR004870 GO:0005643|GO:0006913|GO:0017056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04827 11 68212015 68222334 Vimu11g04827 11 68212015 68222334 ECH