Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04825 ATGGAGTCAAAGGGTGTGCGGTTCTTAGCGTACCAATCAATATTTTCGAGTGTTGGATCTGGTGACTTTGATGGGGTGAAGAAACTGGTGGAGAAAGTGAAGAACGAAGAAGGGTCACTGCTCTCTGATGTGATGTCTCTTCAGAACGATGCTGGAGAAAGTGCACTTTACATCGCTGCAGAGAATAATCTGCAAGAGATTTTCAGCTACTTGCTCAACTCGTGTGACTTTGAAGCCGTCAAGATTCGCTCCAAGTCTGACATGAACGCCTTTCATGTTGCTGCCAAACGTGGTCATCTAGATATTGTGAGGGAGCTTTTGAGTACTTGGCCTGAGGTCTGCAAGTTATGCGACTCCTCAAACACCAGTCCTCTATATTCTGCTGCAGTTCAAGACCACTTGGATGTGGTGAATGCCATCTTGGATGTTGATGTCAGTTCAATGTTTATTGTTAGGAAAAACGGAAAAACTTCATTGCACAATGCTGCCCGATATGGCGTGGTTCGTATTGTAAAAGCACTTATTGCTCGGGATCCAGGAATTGTATGCATAAAAGATAAAAAAGGTCAAACTGCACTTCATATGGCTGTCAAAGGACAGTGTACTTCAGTGGTGGAAGAGATATTACTAGCTGATCCTTCTATATTGAATGAGCGAGATAAAAAGGGTAATACAGCCCTTCACATGGCTACAAGGAAATGCCGTTCACAGGTGTTTATTCAGATAGTGATCCTTTTGCTAAGCTATTCTGCCATGGATGTTAATGCCATCAACAAGCAGCAGGAAACAGCGTTGGATTTGGCAGATAAACTGCCATACGGAGATTCAGCTTTGGAAATCCAGGAAGCACTTGCAGAATACGGAGCTAAGCATGCGAGACATGTTGGACAAGTAGACGAAGCGATGGAACTTAAAAGAACCGTGAGTGACATAAAACATGAGGTGCAGTCGCAACTTATACAAAACGAAACAACTCGTCGACGGGTTTCTGGAATTGCCAAAGAACTGAAGAAACTTCATAGAGAGGCAGTTCAAAACACCATTAATTCTGTCACAGTGGTTGCTGTTCTTTTTGCCTCAATAGCCTTCTTGGCCATCTTCAATTTGCCGGGACAATATCGAGTGCAACCCGGAGAAGAGATTGGAAAAGCTTATATAGCCGATCATCTTAGTTTCCAAGTTTTCTGCTTTCTGAATTCCACGTCCCTTTTCATTTCTCTTGCAGTTGTGGTAGTTCAAATCACTTTGGTGGCCTGGGACACAAGGGCTCAAAAGCAGCTTGTGTCAGTGGTTAACAAGTTGATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTAGCCATAGCTTTTGAGGTTGTTGGAGGGAAAACATGGATGGCTATCACCATAACCCTTTTGGGAGTACCTATTCTAGTAGGGACTCTGTTAAGCATGTCCTACTTTGTTTTTCGACAACATTTCGGTATTTTCCGCAGTGATTCCCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCTTTTTCATGGTCTTACTCTGTAAATATATCAGACTTGGATGAATACGATTCTGACATTGAGAAGATCTATGCCCTGTGA 1599 0.4328 MESKGVRFLAYQSIFSSVGSGDFDGVKKLVEKVKNEEGSLLSDVMSLQNDAGESALYIAAENNLQEIFSYLLNSCDFEAVKIRSKSDMNAFHVAAKRGHLDIVRELLSTWPEVCKLCDSSNTSPLYSAAVQDHLDVVNAILDVDVSSMFIVRKNGKTSLHNAARYGVVRIVKALIARDPGIVCIKDKKGQTALHMAVKGQCTSVVEEILLADPSILNERDKKGNTALHMATRKCRSQVFIQIVILLLSYSAMDVNAINKQQETALDLADKLPYGDSALEIQEALAEYGAKHARHVGQVDEAMELKRTVSDIKHEVQSQLIQNETTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYRVQPGEEIGKAYIADHLSFQVFCFLNSTSLFISLAVVVVQITLVAWDTRAQKQLVSVVNKLMWAACACTCGAFLAIAFEVVGGKTWMAITITLLGVPILVGTLLSMSYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSVNISDLDEYDSDIEKIYAL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04825 532 ProSiteProfiles Ankyrin repeat profile. 154 175 IPR002110 GO:0005515
Vimu11g04825 532 Gene3D - 10 310 IPR036770 -
Vimu11g04825 532 SUPERFAMILY Ankyrin repeat 14 289 IPR036770 -
Vimu11g04825 532 Pfam Domain of unknown function 342 450 IPR026961 -
Vimu11g04825 532 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 21 511 - -
Vimu11g04825 532 ProSiteProfiles Ankyrin repeat region circular profile. 154 175 - -
Vimu11g04825 532 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vimu11g04825 532 SMART ANK_2a 51 79 IPR002110 GO:0005515
Vimu11g04825 532 SMART ANK_2a 120 150 IPR002110 GO:0005515
Vimu11g04825 532 SMART ANK_2a 188 217 IPR002110 GO:0005515
Vimu11g04825 532 SMART ANK_2a 222 256 IPR002110 GO:0005515
Vimu11g04825 532 SMART ANK_2a 154 183 IPR002110 GO:0005515
Vimu11g04825 532 Pfam Ankyrin repeats (3 copies) 159 256 IPR002110 GO:0005515
Vimu11g04825 532 Pfam Ankyrin repeats (3 copies) 56 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04825 Vimu-Chr11 68198602 68201626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04825 1 532 Miscellaneous Gene Families AT2G01680 67.712 0.0 715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04825 11 68198602 68201626 Vimu11g04825 11 68198602 68201626 ECH