Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04821 ATGGCCACTTCGAAGACGGTGATGTGTTCGCTGACCCACTTGCGTCCGCTAACATGCGCCGCATCTGCATCGGCGTCACGATTAGTTCCCTACCCACCGGACCTCATAAAGTGGGTAACCAGAGAGGGCGGATTCGTGCACCGCGCGCTGGATATAGCACAACTGGGTTCATCCAACGGACTGGGTGTAGTGGCCAAGGAACCAATTCCACGTGGCACTGACCTAATTGTCCTCCCGCACCACCTTCCCCTGCGCTTTACCACTCTTGAACACGACCCTGTGCTGCATCACTTGGCGCGCCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCTAAAGTTGGGTCCTTTTGGTGGCCGTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCATTATGCTCCACTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGACCAAGAAGTGAAGCGTGCCTTAGCAAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCCTTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGGATTCACATACCCATGATGCTTCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCGATACCATGAAGATGCAAGTTGTGGCTGAGACAGCCATCAAAGAAGATGACCCTCTGTTACTTTGCTACGGCTGTTTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATTCACTCAAACCCTTTTGATTGTATTGAGCTCAAATATGATGGCGCTCTTTTGGATGCTGCAAGCACTGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCGTGGCAGGAACAGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGAGTAATCCTTTCGAGTAATGTGGAAACTGTGCAGAAGTATGATCTCAGTACACTAAAGTCTTTGGATGTTGAGGCTCCTCTCGGTGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATCGCACTGGAACACTTTCCGACCAAAATAATGGATGATGAATCTCTGTTGAAGCAGGGTGCTTCAGGTCCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCTATCGCTGAAGGCTGA 1413 0.4643 MATSKTVMCSLTHLRPLTCAASASASRLVPYPPDLIKWVTREGGFVHRALDIAQLGSSNGLGVVAKEPIPRGTDLIVLPHHLPLRFTTLEHDPVLHHLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFDQEVKRALASVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRIHIPMMLPLIDMCNHSFNPNARIVQEEDTDTMKMQVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVIHSNPFDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQEQILSQLNLSGETPDLKVSLGGQETVEGRLVAALRVILSSNVETVQKYDLSTLKSLDVEAPLGVANDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGPTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETAIAEG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04821 470 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 435 - -
Vimu11g04821 470 FunFam SET domain containing protein 311 464 - -
Vimu11g04821 470 Gene3D set domain protein methyltransferase, domain 1 11 288 - -
Vimu11g04821 470 Pfam Rubisco LSMT substrate-binding 323 445 IPR015353 -
Vimu11g04821 470 FunFam Histone-lysine N-methyltransferase setd3 3 288 - -
Vimu11g04821 470 Gene3D - 322 465 IPR036464 -
Vimu11g04821 470 SUPERFAMILY SET domain 33 293 IPR046341 -
Vimu11g04821 470 SMART set_7 48 281 IPR001214 GO:0005515
Vimu11g04821 470 Pfam SET domain 60 275 IPR001214 GO:0005515
Vimu11g04821 470 CDD SET_LSMT 60 289 - -
Vimu11g04821 470 ProSiteProfiles SET domain profile. 48 275 IPR001214 GO:0005515
Vimu11g04821 470 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 285 464 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04821 Vimu-Chr11 68185352 68189682 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu11g04821 SET 5.7e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04821 11 68185352 68189682 Vimu11g04821 11 68185352 68189682 ECH