Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04809 ATGGGCGACATGAAAGATAAGGTTAAAGGGTTCATGAAGAAAATGAACAATCAATTCTCCTCTTCATCATCTGGAAAATTCAAGGGCCAAGGTAGAGTCCTCGGTTCTTCTTCTACACCCGCCAATTCCAATCCTACCCCTCGCCCCATTCCTTCGCTCAACCCTAATTCCAAACCTTCCTCGACCAATCCCAAACCCACTTCAACCAATCCCAAACCCTCTCCCCACAATACGGAGCCCAGTAGGAGCACCGAGAAGCCTCGCAAAGATGGTGATGGGTTTGACCCGTTTGATTCTTTGGTCACTAATTCTAACAGATCTCAAAATGGGTATTCACTGAACGTGTTTGAATGTCCCGTTTGTAAACAACCTTTCGGGTCCGAAGAAGCTGTCTCTGAACACGTGGATGATTGTTTGAGTAACCTTGTTGAGCGTGAGCCTATAGGTGATGGTGGAAACGGGGTTTCAGAGAGTGAGATTGGGTCTAACACTGGTGGTGAATTGGAGGTTTGTGTTGGGACTTACGTTTCGGGGAATCCATCTGAGGGATCGGTTGATATTGTTCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTGAAGTTTAGGAGGATCAGGATGAGTAATCCCAAGATAAAAGAGGCTGTTGGTGACGTTGCTGGGGGGGTTGAGTTGCTCAGTTTTCTGGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCCAGAGAGGAGCAGATAAAATTCATCAAGAAGGCCATTGTGTTACTGGAATCACAACTTGTGCAGCAAGCATCTTCAAAGAGAGAGGATTCGGCGTCTGCAAATTCTGCGCAGACTAGTGTGAAGATCGAGCGAAAGCCAGTCGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAGCCTTTCATCCGAAGAGGTGAGAAGAGAAGCTGAGTTAAGGAGAAAAAAGCTTGCAGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAACAAGCAAAAGCTTCCAGGAAGAGATACACAAAAACTATAATCAGAATTCAATTTCCCGATGGAGTTGTACTTCAAGCTGTATTTGCTCCGTGGGAACCAACCACTGCTCTCTACGAGTTTGTCAGCTCAGCACTAAAGGAAGAAGGTTTGGAATTTGAGCTAATGCATCCTGTAATTGTCCAACGGCGTGTGATCCCTCATTTTCCAAAAGCAGGGGAAAATCCTAAAACCATAGAGGAAGAAGACCTGGTACCTTCAGCTCTAATTAAGTTCAAGCCCTTGGAAACAGATTCTGTTGTTTTCACAGGTCTCAAAAACGAATTGCTTGAAATCAGTGAACCACTTGTTAATAGTTAA 1416 0.4484 MGDMKDKVKGFMKKMNNQFSSSSSGKFKGQGRVLGSSSTPANSNPTPRPIPSLNPNSKPSSTNPKPTSTNPKPSPHNTEPSRSTEKPRKDGDGFDPFDSLVTNSNRSQNGYSLNVFECPVCKQPFGSEEAVSEHVDDCLSNLVEREPIGDGGNGVSESEIGSNTGGELEVCVGTYVSGNPSEGSVDIVLKLLRNIGREPENVKFRRIRMSNPKIKEAVGDVAGGVELLSFLGFELREENGETWAVMEVPREEQIKFIKKAIVLLESQLVQQASSKREDSASANSAQTSVKIERKPVDRQVKVFFAVPESVAAKIELPDSFYSLSSEEVRREAELRRKKLADSQLLIPKSLKEKQAKASRKRYTKTIIRIQFPDGVVLQAVFAPWEPTTALYEFVSSALKEEGLEFELMHPVIVQRRVIPHFPKAGENPKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04809 471 FunFam UBX domain-containing protein 6 354 445 - -
Vimu11g04809 471 CDD PUB 181 261 - -
Vimu11g04809 471 MobiDBLite consensus disorder prediction 14 43 - -
Vimu11g04809 471 SUPERFAMILY Ubiquitin-like 332 444 IPR029071 -
Vimu11g04809 471 SUPERFAMILY PUG domain-like 180 266 IPR036339 -
Vimu11g04809 471 MobiDBLite consensus disorder prediction 1 108 - -
Vimu11g04809 471 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 470 - -
Vimu11g04809 471 Pfam PUB domain 182 256 IPR018997 -
Vimu11g04809 471 FunFam Plant UBX domain-containing protein 2 177 263 - -
Vimu11g04809 471 MobiDBLite consensus disorder prediction 79 95 - -
Vimu11g04809 471 SMART c2hc_5 115 139 IPR006642 GO:0003677|GO:0006281
Vimu11g04809 471 ProSiteProfiles UBX domain profile. 360 444 IPR001012 GO:0005515
Vimu11g04809 471 Pfam UBX domain 361 410 IPR001012 GO:0005515
Vimu11g04809 471 Gene3D - 178 264 - -
Vimu11g04809 471 Gene3D - 354 447 - -
Vimu11g04809 471 SMART PGNneu 183 250 - -
Vimu11g04809 471 Gene3D Classic Zinc Finger 112 141 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04809 1 392 C2H2 Transcription Factor Family AT2G01650 54.412 8.68e-143 412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04809 11 68103193 68106712 Vimu11g04809 11 68103193 68106712 ECH