Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04807 ATGGAGAGAGATTTCATGGGTCTCAACTCGAAAGAACCAGCCACTGCGGTGAAGGAGGAGATCAACGTTGATGACTACGAAGACTCTGGCATAAATCGCTATCAAGTTCTTACCGGTTTTGTTAATTTGGGCTTCACAAAGGGTTCCATTGCACAGTGGCCTTTCTCGAACAAAGTATCCGCCATTCCTCATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATGTTGTCTGGTCCCATAACAGCTGGTCTTTTATCTGTCTTAAGTCAAGATGCAATTGAGTCTAGTCACAAACGCTCTGCCGGTGACACCCAGAAATCTTTCAATCACGATGGGCAAGGTGGTCATCATTTTTCGCTGACTCCATTTCCAGTACAACATGATGTGAATTCTGTGCATCGTCCTCATGATGTGAAGATGTTTTCGGTTCCCAATCAAGCAATTCCAGTTTCCATGGGGAATCCATTCCTGAATAATCATTTTGCAACTGGTGGCCAGAATATGAATGGCACTAGTGTGAAGCAGCCATTACTTGGGGGAATACCTGTTTCTGTGCCCCATTTAGTTATTCCCAATGCTGGTGCTGTTGCTGGAATGGTGGAACCATGTATGAGACCATCTCCGCCTTCTGCTCAGCTTACCATCTTCTATGGGGGAACTGTCAAAGTCTTTAATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGCAGTAGCGTATCTGTAGCTCCTAGCATGGTCCAGCCAAAAGTTCACATGCCAGTTTCGAAGTTGGCTGCTGGCGACGGTGTGCCTGCGACTCAACCTGCAAATACACCACCCGGCTCTGGCCTTTCAAGCCCTATATCTGTTTCTTCACATACTGGAGCACAATCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCTAAAACAACTGGAGTTCCTGTTAGCAATGTGGAGCCTCCAAAGGTAGTCAGTGCAGCCACTATGTTGACATCAGCTGTACCTCAGGCTAGGAAAGCATCATTGGCTAGATTTTTAGAAAAACGCAAAGAGAGAGTGACGAGTGCAGCACCATACAACCTTAACAAGAAGTCTGAAGAGTGTGGCCCTGCAGAATTTGCCGGTGTCATCTCAATGCAAGGATAG 1158 0.4603 MERDFMGLNSKEPATAVKEEINVDDYEDSGINRYQVLTGFVNLGFTKGSIAQWPFSNKVSAIPHLMSFKASQDDKTKKMLSGPITAGLLSVLSQDAIESSHKRSAGDTQKSFNHDGQGGHHFSLTPFPVQHDVNSVHRPHDVKMFSVPNQAIPVSMGNPFLNNHFATGGQNMNGTSVKQPLLGGIPVSVPHLVIPNAGAVAGMVEPCMRPSPPSAQLTIFYGGTVKVFNDISAEKAQAIMLLAGSSVSVAPSMVQPKVHMPVSKLAAGDGVPATQPANTPPGSGLSSPISVSSHTGAQSGSGSTSTDEFLAAKTTGVPVSNVEPPKVVSAATMLTSAVPQARKASLARFLEKRKERVTSAAPYNLNKKSEECGPAEFAGVISMQG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04807 385 SMART tify_2 210 245 IPR010399 -
Vimu11g04807 385 MobiDBLite consensus disorder prediction 267 307 - -
Vimu11g04807 385 MobiDBLite consensus disorder prediction 276 307 - -
Vimu11g04807 385 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 116 370 IPR040390 -
Vimu11g04807 385 ProSiteProfiles Tify domain profile. 210 245 IPR010399 -
Vimu11g04807 385 Pfam tify domain 211 244 IPR010399 -
Vimu11g04807 385 MobiDBLite consensus disorder prediction 99 121 - -
Vimu11g04807 385 Pfam Jas motif 339 363 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04807 Vimu-Chr11 68093876 68096818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04807 53 372 Tify Gene Family AT3G17860 35.294 3.53e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu11g04807 tify 6.7e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04807 11 68093876 68096818 Vimu11g04807 11 68093876 68096818 ECH