Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03619 ATGGACGCAAGAAGGTCTGAGGGAAAGAGAGTCTTGAGGTACAGCGAGGAGGAGGAAGATGAAGAAGAAGAAGAGGAGGAAGAGGTTGAGACGGTTTTTGGAGAAGATGGAAGGAGGAATAAGAGAGTAATGAGAGATCTCTATGGAAAGAAAGGGTCGAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTAGATAACTGTGATGCTGATCTAAGTGAAGCCAAGCAATATCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCTGCAACAAAGATTCCATGAGCTGTCTGAATTTGATGAATCAAAAAGGAGTTGTAGAACACGGCTGGTTGGTCATAACGAGAGGCGACGCAAAAGTGCAGTTGACTATCGTGGAGAGTAA 414 0.4614 MDARRSEGKRVLRYSEEEEDEEEEEEEEVETVFGEDGRRNKRVMRDLYGKKGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFHELSEFDESKRSCRTRLVGHNERRRKSAVDYRGE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03619 137 MobiDBLite consensus disorder prediction 1 37 - -
Vimu11g03619 137 ProSiteProfiles Zinc finger SBP-type profile. 60 130 IPR004333 GO:0003677
Vimu11g03619 137 MobiDBLite consensus disorder prediction 17 31 - -
Vimu11g03619 137 Pfam SBP domain 63 129 IPR004333 GO:0003677
Vimu11g03619 137 Coils Coil 15 35 - -
Vimu11g03619 137 MobiDBLite consensus disorder prediction 1 16 - -
Vimu11g03619 137 SUPERFAMILY SBT domain 61 134 IPR036893 GO:0003677|GO:0005634
Vimu11g03619 137 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 130 IPR044817 GO:0003677
Vimu11g03619 137 Gene3D - 53 117 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03619 Vimu-Chr11 58099595 58101408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03619 43 131 SBP-box Gene Family AT1G53160 60.825 1.46e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu11g03619 SBP 3.6e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03619 11 58099595 58101408 Vimu2g00675 2 4067301 4068823 PCT