Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04074 ATGGTGAAAGCTGCGAGCGAGAATGGTTCTTCTCCCGTGGCACCTTTCTTGACCAAATGTTACGATATGGTTCAAGATCCTTCCACCGACTCTATCATCTATTGGTCTCAATCCGATAACAGTTTCATCATCGATAACGTCTCCAAATTCTCTCTCACTCTTCTTCCTAATTACTTCAAACACAATAACTTCTCCAGCTTCGTCAGACAGCTCAATATCTATGGTTTCAGGAAAATTGATACGGATAACTGGGAATTTGCTAATGAAAACTTCATTAAGGGTCAAAAGCATTTGTTGAAGAATATACGTAGGAGGAAACATCCACATGTTGCAGATCAGCAAAAAGCATTGCCGCAGATAAACAATTCTGATGAACCATCACTAGACACAATGAATTCAAACCTTTGGAAAGAAGTCGAGAATCTCAAATCCGACAGAAAAAATCTGACACAAGAGTTGGTTAAGCATAAGCAGCACCTCGAATCTTCTGAGAGTAAGTTGCTTCTACTGAGTGATCGTCTGGAAGGAATGGAGAAGCATCAACAGCAGATGCTATCATTCTTGGTCATGGTTGTACAATGCCCTGGGTTCCTGGCTCAGCTGCTTCACCCTAAGGAAAATAACTGGCGTTTTGCAGAAGAAAGGAATATGTGGGACCAGAGTAGCCAAGATGATGAACCAGTTCCGTCTGATGGAGCGATTATAAAGTATAAGCCACCTGTAAGTGAAACACTAAAGCCTGTAGTTCCGCGATCTCCTGCATTTGAACGAGAACCCGAACTTTCTGCAGATGGGATGAAAGATTTGTGCATCAGTTCTGAGTTCTTGAAATTGCTCCTAGATGAGAAATTATCTCCATTAGATAACCATTCTCCGTTTCTCGTACCGGATTTACCTGATGATGGTTCGTGGGAAAAACTTTTTTTGGGCAGTCCTTTCCCCGAAAACGATGAAGATACTGATCATGAAAATGAGAGGCACAATGTTAGTGAGATGGAGATGGAACCTATGTCGGAAACTCCAAGTGAAAGATCTGCTTTTGAAGCAATGATTGTAGAAATGGAGAAAACTCAAGCATGA 1080 0.4148 MVKAASENGSSPVAPFLTKCYDMVQDPSTDSIIYWSQSDNSFIIDNVSKFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDTDNWEFANENFIKGQKHLLKNIRRRKHPHVADQQKALPQINNSDEPSLDTMNSNLWKEVENLKSDRKNLTQELVKHKQHLESSESKLLLLSDRLEGMEKHQQQMLSFLVMVVQCPGFLAQLLHPKENNWRFAEERNMWDQSSQDDEPVPSDGAIIKYKPPVSETLKPVVPRSPAFEREPELSADGMKDLCISSEFLKLLLDEKLSPLDNHSPFLVPDLPDDGSWEKLFLGSPFPENDEDTDHENERHNVSEMEMEPMSETPSERSAFEAMIVEMEKTQA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04074 359 Coils Coil 132 166 - -
Vifa6g04074 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 226 IPR027725 -
Vifa6g04074 359 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g04074 359 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g04074 359 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Vifa6g04074 359 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g04074 359 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g04074 359 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g04074 359 MobiDBLite consensus disorder prediction 311 344 - -
Vifa6g04074 359 Gene3D - 8 106 IPR036388 -
Vifa6g04074 359 MobiDBLite consensus disorder prediction 315 333 - -
Vifa6g04074 359 FunFam Heat shock transcription factor 1 9 106 - -
Vifa6g04074 359 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04074 Vifa-Chr6 1342199040 1342200829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04074 13 312 HSF AT1G67970 47.855 7.02e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa6g04074 HSF_DNA-bind 9.1e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04074 6 1342199040 1342200829 Vifa6g04074 6 1342199040 1342200829 ECH