Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04042 ATGGCTATGGCAAGAGATAAAGAAGATGAAGAGGTACAGAATGAAAATCAAAAGGGTGGGAAGAGGTTGAAATGCATGAACATGATGAAGAATGAACAAGAAAACCAAGTTGTTGATGAAGAAGAAGATGAAAGTGAACTTCCATTGAAACCAGAGTTTTTCTTCTACCCAACAACTCCAACTTCGTTTGTTGTTTCAGATGCACTTGAATCAGATTTTCCAATCATTTATGTGAACAAAGTGTTTGAAATTTCAACTGGGTATCGTGCCCATGAAGCCCTTGGTCGTAACTGCCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGCGGCGGCATCCTTTGGTGGATCCGGTTGTTGTGTCGGAGATTAGGAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTTTGAATTTTAGGAAGGATGGTACTCCTTTGGTGAATAGACTCAGGCTTACGCCGATTCATGATGACGATGGAGTTGTGACACATGTGATAGGCATTCAAATCTATTCAGAGGTGAACATTGATCTTAATCATGTTTCGTATCCGGTTTATAGAGAGACTTGCATTCAAGATTTTGATAAAAATAGTAAGTGTTCTCCCAAGAGTGGAAGATTATTGTACAGTCCGCAGCAGCAGCAGCAGCGCCGAGAGATGTGTGCCATTCTTCAGCTTTCTGATGAGGTTTTGGCGCATAATATTTTATCGCGTTTGACACCGAGGGATGTTGCGTCGATTGGTTCTGTTTGCAGGAGGATTCGTCAACTAACGAAGAACGAGCATGTTAGGAAGATGGTTTGTCAGAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGACTATCTCGAGAGCTAACTACTCTAGAGGCTGTTTGCTGGAAAAAAGTGACAGTTGGAGGCGGAGTCGAGCCTTCCCGCTGCAATTTCAGCACTTGTGCTGCAGGAAATAGGCTTGTATTGTTTGGAGGTGAAGGAGTCGATATGCAGCCTATGGATGATACTTTTGTTCTAAACCTCGACGCCAAAAATCCAGAATGGCAAAGGGTTATCGTGAAAGCATCCCCGCCCGGCCGGTGGGGTCACACGCTCTCCTGCTTAAATAGTTCTTGGCTGGTGGTTTTCGGTGGATGCGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAACCAACATGGAAGGAGGTCTTCGGCGGAGCACCGCCTCTTCCGAGATCATGGCACAGTTCTTGCACAATTGAAGGCTCCAAATTGGTGGTCTCGGGTGGTTGCACGGATGCCGGAGTGCTTCTTAGTGACACACATTTGCTCGATCTAACAATAGACAATCCTACATGGAGAGAAATTCCAACTCCATGGACACCACCTTCTAGGTTAGGACACTCGCTATCCGTCTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTAAGGTTAAGATCAGGAGATGCTTATACAATTGATTTGGAAGCTGAACAGCCACAATGGAGACAACTAGAATGCAGTGCATTCACTGGATTAGCAAATCAAAACGAGGTTGTTCCTCCTCCTAGATTAGATCATGTTGCTGTAAGCATGCCTTGTGGGAGGGTCATTATATTTGGAGGTTCCATCGCAGGTCTTCACTCGCCGTCTCAGCTATTTCTATTGGACCCGTCCGAAGAGAAACCTTCGTGGAGGATCCTCAATGTTCCGGGGCAACCACCTAAGTTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTGTTGGGTGGACATACAGGAGAGGAATGGGTACTCAACGAGTTGCATGAGTTATGCTTGGCAAGCCGACAGGATTCCGACATGTAA 1914 0.4566 MAMARDKEDEEVQNENQKGGKRLKCMNMMKNEQENQVVDEEEDESELPLKPEFFFYPTTPTSFVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHVIGIQIYSEVNIDLNHVSYPVYRETCIQDFDKNSKCSPKSGRLLYSPQQQQQRREMCAILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLSRELTTLEAVCWKKVTVGGGVEPSRCNFSTCAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVIVKASPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTHLLDLTIDNPTWREIPTPWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGDAYTIDLEAEQPQWRQLECSAFTGLANQNEVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04042 637 Pfam Kelch motif 542 589 IPR011498 GO:0005515
Vifa6g04042 637 FunFam Putative LOV domain-containing protein 501 633 - -
Vifa6g04042 637 SUPERFAMILY Kelch motif 305 521 IPR015915 GO:0005515
Vifa6g04042 637 FunFam Putative LOV domain-containing protein 295 500 - -
Vifa6g04042 637 Pfam F-box domain 224 261 IPR001810 GO:0005515
Vifa6g04042 637 Gene3D PAS domain 56 180 - -
Vifa6g04042 637 Gene3D - 376 499 IPR015915 GO:0005515
Vifa6g04042 637 Gene3D - 500 630 IPR015915 GO:0005515
Vifa6g04042 637 CDD PAS 59 169 IPR000014 -
Vifa6g04042 637 SUPERFAMILY F-box domain 221 299 IPR036047 GO:0005515
Vifa6g04042 637 NCBIfam PAS domain S-box protein 72 169 IPR000014 -
Vifa6g04042 637 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 41 631 - -
Vifa6g04042 637 Pfam Galactose oxidase, central domain 383 430 - -
Vifa6g04042 637 Pfam Galactose oxidase, central domain 432 483 - -
Vifa6g04042 637 MobiDBLite consensus disorder prediction 1 26 - -
Vifa6g04042 637 FunFam Adagio protein 1 51 181 - -
Vifa6g04042 637 Gene3D - 209 312 - -
Vifa6g04042 637 Pfam Galactose oxidase, central domain 318 368 - -
Vifa6g04042 637 Coils Coil 23 43 - -
Vifa6g04042 637 SUPERFAMILY Kelch motif 537 628 IPR015915 GO:0005515
Vifa6g04042 637 CDD F-box_AtADO-like 224 269 - -
Vifa6g04042 637 MobiDBLite consensus disorder prediction 1 18 - -
Vifa6g04042 637 SMART pac_2 134 175 IPR001610 -
Vifa6g04042 637 SUPERFAMILY PYP-like sensor domain (PAS domain) 63 170 IPR035965 -
Vifa6g04042 637 Pfam PAS domain 69 170 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04042 Vifa-Chr6 1333501304 1333503559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04042 62 171 AGC Kinase Gene Family AT5G58140 44.545 6.98e-21 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04042 6 1333501304 1333503559 Vifa6g04042 6 1333501304 1333503559 ECH