Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04041 ATGGCGACGATGACGAGCTTGATTGGTCTCATCAACAAGATCCAACGAGCTTGCACCGTCTTGGGAGATCACGGCGGCGAGGGTTTATCTCTCTGGGAAGCTCTTCCGTCCGTCGCCGTTGTCGGCGGACAAAGTTCGGGGAAATCCTCTGTGTTGGAAAGTGTAGTTGGAAGAGACTTTCTCCCTCGTGGATCTGGTATTGTTACGCGGAGACCGCTGGTACTGCAACTTCATAAAACTGAAAATGGGCAGGAATATGCAGAGTTTCTTCACTTGCCAAGAAAGAGATTCACCGACTTTGCTGCTGTGAGGAAGGAAATAGCAGATGAAACAGATCGAATAACTGGGAAGTCAAAGCAGATTTCAAATCATCCTATTCACCTCAGCATTTATTCTCCAAATGTTGTAAACTTAACCCTCATAGATCTTCCTGGGTTGACGAAGGTTGCTGTAGAGGGGCAACAAGAGAGTATTGTTCAAGATATTGAAAACATGGTCCGTTTGTATGTTGAGAAGCCAAACTGCATTATCTTAGCTATTTCTCCCGCCAATCAAGATATTGCCACTTCAGATGCCATAAAAATTGCAAAAGAAGTTGATCCTTCAGGTGAAAGAACATTTGGAGTGGTTACAAAACTTGATCTTATGGATAAAGGAACTAATGCAGTTGAGGTTCTTGAGGGAAGGCAATACAGGCTGCAGCATCCATGGGTTGGAATTGTGAACCGTTCTCAAGCTGATATTAATAAAAATGTTGACATGATTGCCGCTCGAAGGAAGGAACGTGAATACTTTGAGACAAGTCCTGAATATGGACATTTGGCGCATAAAATGGGCTCAGAATATCTTGCTAAGCTTCTATCTCAGCATTTGGAACAAGTAATTAGGCAGAAGATACCTAGTATCATTGCTTTAATAAACAAGACCATTGACGACCTTAATGCAGAATTAGATCGCATTGGCAGGCCGATTGCCGTGGACTCTGGGGCCCAACTATACACAATTTTAGAAATGTGTCGTGCATTCGACAAAGTATTTAAAGAGCACCTGGATGGAGGGCGTCCAGGTGGGGACCGGATATACGGAGTTTTTGATCACCAATTACCGGCTGCTTTGAAAAAGTTACCCTTTGATCGCCATCTTTCCTTAAAAAATGTCCAAAAAATTGTCACTGAAGCTGATGGGTATCAACCTCATCTGATTGCTCCAGAGCAGGGTTATAGAAGACTCATTGAAGGGTCTATCAGCTATTTCAAAGGCCCAGCTGAAGCATCTGTGGATGCTGTCCACTTTGTTTTAAAGGAACTTGTACGAAAGTCAGTTGCAGAAACTGAGGAGTTAAGAAGATTCCCAACGCTTTCCCATGATATTGCAACTGCAGCAAATGAAGCTCTGGATAGATTCCGAGACGAAAGCAAGAAGACAGTTATGCGGTTGGTTGATATGGAGTCTAGCTATCTAACTGCAGATTTTTTTAGAAAGATTCATCTCGAACCAGAAAAGAATTCAAATGGACCACCAAATTCAAACCGGAATGCTCCCCCTAACACGGACAATTTTACTGACAATCACCTCCGCAAGATTGGATCAAATGTAAGTGCTTATATCAACATGGTTTGTGATACACTTAAGAATACTATACCAAAAGCCGTAGTCTATTGCCAAGTCAGAGAAGCCAAGAGATCATTGTTAAACTACTTTTACATTCAAGTCGGAAAGAAGGAGAAGGATAGATTGGGCGCCATGTTGGATGAAGACCCAGCCCTAATGGAAAGAAGAAATCAAATAGCTAAAAGACTTGAATTGTACAAGCAAGCTAGAGACGATATTGACTCCGTGGCTTGGAAATAG 1851 0.4252 MATMTSLIGLINKIQRACTVLGDHGGEGLSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTENGQEYAEFLHLPRKRFTDFAAVRKEIADETDRITGKSKQISNHPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQQESIVQDIENMVRLYVEKPNCIILAISPANQDIATSDAIKIAKEVDPSGERTFGVVTKLDLMDKGTNAVEVLEGRQYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLAHKMGSEYLAKLLSQHLEQVIRQKIPSIIALINKTIDDLNAELDRIGRPIAVDSGAQLYTILEMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSLKNVQKIVTEADGYQPHLIAPEQGYRRLIEGSISYFKGPAEASVDAVHFVLKELVRKSVAETEELRRFPTLSHDIATAANEALDRFRDESKKTVMRLVDMESSYLTADFFRKIHLEPEKNSNGPPNSNRNAPPNTDNFTDNHLRKIGSNVSAYINMVCDTLKNTIPKAVVYCQVREAKRSLLNYFYIQVGKKEKDRLGAMLDEDPALMERRNQIAKRLELYKQARDDIDSVAWK 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04041 616 CDD DLP_1 35 300 IPR001401 GO:0003924|GO:0005525
Vifa6g04041 616 Pfam Dynamin family 38 212 IPR045063 -
Vifa6g04041 616 MobiDBLite consensus disorder prediction 502 522 - -
Vifa6g04041 616 Pfam Dynamin GTPase effector domain 523 613 IPR003130 GO:0003924|GO:0005525
Vifa6g04041 616 Pfam Dynamin central region 221 488 IPR000375 -
Vifa6g04041 616 Gene3D - 4 309 IPR027417 -
Vifa6g04041 616 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 300 IPR030381 GO:0005525
Vifa6g04041 616 ProSiteProfiles GED domain profile. 525 616 IPR020850 -
Vifa6g04041 616 FunFam dynamin-related protein 1E 4 309 - -
Vifa6g04041 616 PRINTS Dynamin signature 35 53 IPR022812 -
Vifa6g04041 616 PRINTS Dynamin signature 132 149 IPR022812 -
Vifa6g04041 616 PRINTS Dynamin signature 60 77 IPR022812 -
Vifa6g04041 616 PRINTS Dynamin signature 182 200 IPR022812 -
Vifa6g04041 616 PRINTS Dynamin signature 201 217 IPR022812 -
Vifa6g04041 616 PRINTS Dynamin signature 224 243 IPR022812 -
Vifa6g04041 616 PANTHER DYNAMIN 6 613 IPR022812 -
Vifa6g04041 616 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Vifa6g04041 616 Gene3D Dynamin, middle domain 326 579 - -
Vifa6g04041 616 SMART GED_2 520 613 IPR003130 GO:0003924|GO:0005525
Vifa6g04041 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 308 IPR027417 -
Vifa6g04041 616 SMART dynamin_3 4 251 IPR001401 GO:0003924|GO:0005525
Vifa6g04041 616 FunFam Dynamin-related protein 1C 331 593 - -
Vifa6g04041 616 MobiDBLite consensus disorder prediction 498 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04041 Vifa-Chr6 1333485245 1333491421 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04041 6 1333485245 1333491421 Vifa6g04041 6 1333485245 1333491421 ECH