Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04036 ATGTCATCACCAAACTATGCTCAATCCCACGCGCCACTTCTTCGTCCACGTCGCGTGTCTCGCACGCCCGTCCTCGCGCTCCTTCTCGGCCGCCGCGGACCTTCCGTTCTTGTCCGCGAAACCGCCGCGCGCGAGCTCGAAGAGCGGCGCGCCGACTGGGGTTACTCGAAGCCGGTGGTAGTGCTTGATGTGACGTGGAACGCGGCCTTCGTGGTGGTCGCGGCGGTTATGTTAGGTTGCAGTGTTGACGAGAATCCTAACACGCCGATTCGGTTGTGGATCTGCGGGTATGCGTTGCAGTGTTTGGTTCATGTGGCGTTGGTGTGGTTGGAGTATAGGAGGAGGAACGGGAGTGGAGGAGGAAGGGATGAGGAATCTCTTGATGGAGACGTTAATGATAGCGAGGATGATGATGATGATGTTGAATTTCGGAATTCTTCTCGTTCCGGATTTGCAAAACGATGTGCATCGTTGAATACCATGCTTTCATTGATTTGGTGGATGGTGGGCTTTTACTGGGTTGTATATGGTGGTGATATTCTAATGCAAGATGCTCCACGGTTGTACTGGTTGGCTGTTGTCTTTCTAGCATTTGATGTCTTCTTTGCTGTCTTTTGTGTTGCTTTGGCATGCTTAATTGGCATTGCCCTCTGCTGCTGTTTACCCTGTATTATTGGTATTCTTTACGCCGTTGCGGGTCAGGAGGGTGCATCTGAATCAGATCTTAGTATACTTCCAAAATATAAGTTTCACGCAACAAGCAATGAGGAAACACCTAGTCCAAGAGGTGGATCAATGGTTCCCATTGAAAATAGCAGTGGTGCAAATGAACGAGTACTTTCACCAGAGGATGCAGAATGCTGTATATGCATCTCTCCATACGAGGATGAAGCAGAGCTTCACGCACTTCCTTGTAACCACCATTTTCATTCCACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTATGCAAGTTCAACATTCTAAAGGGAAATGAACAGGTGTGA 1017 0.4877 MSSPNYAQSHAPLLRPRRVSRTPVLALLLGRRGPSVLVRETAARELEERRADWGYSKPVVVLDVTWNAAFVVVAAVMLGCSVDENPNTPIRLWICGYALQCLVHVALVWLEYRRRNGSGGGRDEESLDGDVNDSEDDDDDVEFRNSSRSGFAKRCASLNTMLSLIWWMVGFYWVVYGGDILMQDAPRLYWLAVVFLAFDVFFAVFCVALACLIGIALCCCLPCIIGILYAVAGQEGASESDLSILPKYKFHATSNEETPSPRGGSMVPIENSSGANERVLSPEDAECCICISPYEDEAELHALPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04036 338 Pfam Ring finger domain 286 328 IPR001841 -
Vifa6g04036 338 PANTHER TARGET OF ERK KINASE MPK-1 29 336 - -
Vifa6g04036 338 SUPERFAMILY RING/U-box 277 332 - -
Vifa6g04036 338 MobiDBLite consensus disorder prediction 117 145 - -
Vifa6g04036 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 336 IPR013083 -
Vifa6g04036 338 FunFam E3 ubiquitin protein ligase RIE1 267 335 - -
Vifa6g04036 338 SMART ring_2 287 327 IPR001841 -
Vifa6g04036 338 CDD RING-H2_PA-TM-RING 286 328 - -
Vifa6g04036 338 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04036 Vifa-Chr6 1331277655 1331284301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04036 3 337 C3H Transcription Factor Family AT1G68070 66.764 9.22e-169 471
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04036 6 1331277655 1331284301 Vifa6g04036 6 1331277655 1331284301 ECH