Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04032 ATGATGGAGTCGAAGGGTCTACGATTCATGACCCATCAATCAATTTTCACCATGGTTGGATCTGGAGACCTTGATGGGTTGAAGAAGCTCTTAGAGAAACTGAAAAAGGAAGATGATGGTAATAGTAATAATGGGTCATCATCATCTTCATCACCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAACGATCACGGTGAAACTCCACTTTACATCGCTGCTGAACGTAATTTGAAGCAGGTTTTCACCTTTTTGCTGAATTTGTGTGATTTTGAGATTCTCAAGATTCGTTCCAAGTCTGATATCAATGCTTTTCATGTTGCTGCTAAGCGTGGCCATTTGGATATTGTGAAGGAGATTTTGAGTTCATGGCCTGAGGTTTGTAAGTTGTGCGACTCGACGAACACCAGCCCTTTATATTCTGCTGCAGTTCAAGACCACTTGGATGTGGTGAATTCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGAAAAACTGCACTACACAATGCTGTTAGGTACGGCGTCGATCGTATTGTGAAAGCACTTATTGCCCGTGATACAGGAATTGTCTGCATCAAAGATAAAAAAGGTCAAACTGCGCTTCATATGGCGGTCAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCGACTATATTGAATGAACGCGATAGGAAGGGTAATACAGCTCTTCACATGGCTACGAGGAAAGGCCGATCACAGATAGTGAGCCTTTTGTTAAGCTATTCAGCTGTGGATGTTAATGCCATCAACATGCAACAAGAAACAGCTTTGGATTTGGCAGATAAACTTCCATATGGATCTTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAATTAGATGAAGCAATGGAACTTAAAAGAACTGTAAGTGATATAAAGCATGAGGTGCAATCACAGCTCATTCAAAACGAAAAAACTCGCCGACGAGTTTCTGGTATAGCTAAGGAATTGAAGAAACTTCATAGAGAAGCAGTTCAAACCACCATTAACTCTGTCACAGTGGTTGCTGTCCTTTTCGCCTCGATAGCATTCTTGGCCATATTCAATTTGCCAGGTCAATATATCATGAAAGGACCACAGACAGGAAAATCTAACATAGCCGATCATGTAGGATTCCAAGTTTTCTGTCTCTTGAATTCGACTTCTCTTTTCATTTCTCTTGCTGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACTAGGGCTCAGAGGCAAATCGTGTCGGTTGTTAACAAGTTAATGTGGGCTGCGTGTGCTTGCACATGTGGCGCGTTCTTGGCGATAGCTTTCGAGGTTGTTGGAACGAAAAAATGGATGGCAATCACCATAACTGCTGTAGGGACACCAATTCTAGTTGGAACTCTAGCAAGCATGTGCTACTTTGTTTTCCGACAACATTTTGGTATTTTTCAGAGCGATTCCCAGAGACGCATCAAGCGAGCAAGTGGAAGCAAATCTTTCTCATGGTCTTATTCTGCGAATATATCAGATTTGGACGAATACAATTCAGACATTGAGAAGATCTATGCTCTCTAA 1626 0.4108 MMESKGLRFMTHQSIFTMVGSGDLDGLKKLLEKLKKEDDGNSNNGSSSSSSPMSVSDVMSLQNDHGETPLYIAAERNLKQVFTFLLNLCDFEILKIRSKSDINAFHVAAKRGHLDIVKEILSSWPEVCKLCDSTNTSPLYSAAVQDHLDVVNSILDVDVSSMFIVRKNGKTALHNAVRYGVDRIVKALIARDTGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDRKGNTALHMATRKGRSQIVSLLLSYSAVDVNAINMQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKLDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQTTINSVTVVAVLFASIAFLAIFNLPGQYIMKGPQTGKSNIADHVGFQVFCLLNSTSLFISLAVVVVQITLVAWDTRAQRQIVSVVNKLMWAACACTCGAFLAIAFEVVGTKKWMAITITAVGTPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDLDEYNSDIEKIYAL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04032 541 Gene3D - 161 318 IPR036770 -
Vifa6g04032 541 ProSiteProfiles Ankyrin repeat profile. 236 261 IPR002110 GO:0005515
Vifa6g04032 541 Gene3D - 10 160 IPR036770 -
Vifa6g04032 541 MobiDBLite consensus disorder prediction 41 59 - -
Vifa6g04032 541 MobiDBLite consensus disorder prediction 35 59 - -
Vifa6g04032 541 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 20 520 - -
Vifa6g04032 541 Pfam Domain of unknown function 352 459 IPR026961 -
Vifa6g04032 541 Coils Coil 332 352 - -
Vifa6g04032 541 ProSiteProfiles Ankyrin repeat region circular profile. 236 261 - -
Vifa6g04032 541 ProSiteProfiles Ankyrin repeat profile. 168 195 IPR002110 GO:0005515
Vifa6g04032 541 SMART ANK_2a 65 95 IPR002110 GO:0005515
Vifa6g04032 541 SMART ANK_2a 168 197 IPR002110 GO:0005515
Vifa6g04032 541 SMART ANK_2a 202 231 IPR002110 GO:0005515
Vifa6g04032 541 SMART ANK_2a 236 266 IPR002110 GO:0005515
Vifa6g04032 541 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vifa6g04032 541 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vifa6g04032 541 ProSiteProfiles Ankyrin repeat region circular profile. 168 195 - -
Vifa6g04032 541 Pfam Ankyrin repeats (3 copies) 70 156 IPR002110 GO:0005515
Vifa6g04032 541 Pfam Ankyrin repeats (3 copies) 200 266 IPR002110 GO:0005515
Vifa6g04032 541 SUPERFAMILY Ankyrin repeat 15 299 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04032 Vifa-Chr6 1330116998 1330118992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04032 2 541 Miscellaneous Gene Families AT2G01680 67.897 0.0 726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04032 6 1330116998 1330118992 Vifa6g04032 6 1330116998 1330118992 ECH