Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04028 ATGGGATTTGGCGGTGGTTTGAAGGCGGCGATGTTAATGTCGTCGTCGCTGAGTCACGTACGTCCGATAACGTGCGCTTCGTCGTCGCGGTTAGTGTCGCATCCACACGATCTTGTGAAATGGGTAACAAGAGAAGGTGGTTTTGTGCACCGTGCGGTGAAGATAGCGCAACTTGATTCCGGTGGTTTAGGGCTAGGGTTAGTGGCTAAGGAAGAAATTCCGATTGGTAGTGAACTGATTGTTCTTCCTCAACATCTTCCTTTGCACTTTACGTCTTTTCATCAGGATTCGAATGATGATGAGAACTCTCTGCTACTTCAATTGAGCTCTCATGTTCCTGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTCCGTGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATATATCAGTAATCTCCCAGAAACATACACTCTCCCTATCTTTTTTCCAGGGGAAGACATCAAGAATTTGCAGTATGCTCCTGTTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAGAAACAAGTCAAGCGTACGTTAGTTGGTGTTACACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCTTCGTCTCTTGGATGGGCGATGTCAGCAGTTTCATCCAGAGCATTCAAGTTGCATGGTAACAAGAATGCAAATGGGATGAACTTTGATATACCAATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTGATCCAAATGCTAGAATTGTTCAGGAACAAGAAACCGAAAGCACAGACATGCGGGTTGTGGCCGAGAAAGTAATCAAGGAAGATGACCCTTTATTACTCTGCTACGGATGTTTAAACAATGATCTTTTCCTTCTTGATTACGGATTCGTGATACAATCAAACCCTTATGACTGTATCGAGCTCAGATATGATGGTGCTCTTTTGGAGGCTGCAAGCACGGCAGCTGGAGTTTCTTCACCAAATTTCTCCACACCTGCTCCATGGCAGGAACTTATTTTATCACAACTAAATCTATCCGGAGAAGCTCCTGATCTCAAGGTGAGCTTAGGTGGTGAAGAAATAATCGAAGGCCGATTATTGGCTGCACTGAGAGTACTCCTTGCAAGTGATAAGGAAACTGTACAAAAGTATGACCTCAACACACTCCAGTCATTAGATGCTGAGGCTCCACTTGGTGTTGCAAATGACATTGCTGTATTCCGTACCTTGATCGCTCTCTGTGTCGTTGCACTCGGACACTTTCCGACGAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCAATTCAGTTCAGAATCCAAAAGAAGTCTATAATTATAGATGTAATGAAAAACCTTGCTAGGAAGGTAAAGCTTCTTTCATCAAATGAGACCGTAACTGCTGAAGGCTAA 1443 0.4317 MGFGGGLKAAMLMSSSLSHVRPITCASSSRLVSHPHDLVKWVTREGGFVHRAVKIAQLDSGGLGLGLVAKEEIPIGSELIVLPQHLPLHFTSFHQDSNDDENSLLLQLSSHVPDELWAMKLGLKLLRERAKLGSFWWPYISNLPETYTLPIFFPGEDIKNLQYAPVLHQVNKRCRFLLDFEKQVKRTLVGVTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKNANGMNFDIPMMLPLIDMCNHSFDPNARIVQEQETESTDMRVVAEKVIKEDDPLLLCYGCLNNDLFLLDYGFVIQSNPYDCIELRYDGALLEAASTAAGVSSPNFSTPAPWQELILSQLNLSGEAPDLKVSLGGEEIIEGRLLAALRVLLASDKETVQKYDLNTLQSLDAEAPLGVANDIAVFRTLIALCVVALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSIIIDVMKNLARKVKLLSSNETVTAEG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04028 480 Gene3D - 336 475 IPR036464 -
Vifa6g04028 480 SUPERFAMILY SET domain 36 303 IPR046341 -
Vifa6g04028 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 474 IPR036464 -
Vifa6g04028 480 ProSiteProfiles SET domain profile. 53 285 IPR001214 GO:0005515
Vifa6g04028 480 Gene3D set domain protein methyltransferase, domain 1 9 298 - -
Vifa6g04028 480 SMART set_7 51 291 IPR001214 GO:0005515
Vifa6g04028 480 FunFam SET domain containing protein 321 474 - -
Vifa6g04028 480 CDD SET_LSMT 68 299 - -
Vifa6g04028 480 FunFam Histone-lysine N-methyltransferase setd3 8 298 - -
Vifa6g04028 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 36 442 - -
Vifa6g04028 480 Pfam Rubisco LSMT substrate-binding 335 456 IPR015353 -
Vifa6g04028 480 Pfam SET domain 64 285 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04028 Vifa-Chr6 1329113656 1329117932 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa6g04028 SET 6.7e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04028 6 1329113656 1329117932 Vifa6g04028 6 1329113656 1329117932 ECH