Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04012 ATGGACGACGTAAAAGACAAAATGAAAGGCTTCATGAAGAAAGTCAATAACCCTTTCTCATCTTCATCCTCTGGCAAATTCAAAGGCCAAGGTAGAACCCTAGGCTCATCATCATCATCGTCATCATCGGCACCGCCAAATTCCATTTCTACCCCTCGTCCTTCTCCTTCTCCTTCTCAGAATCCCAATCCTATTTCTAACCCTAAACCCAAACCCAAACCCGGACCTACTCTACCTGTTGCTTCCGATGATAGCAGAACCGAAAAAGCTCGTAAACCTGGAGATGGATTTGATCCGTTTGATTCTTTGGTTACTTCATCTCAGAGATCTCGAAACGGTTATACAGTCAACGTATATGAATGTCCGATTTGTAATACTCCCTTTAGATCTGAAGATGAGGTTTCTGAACATGTTGTAAGTTGTTTGAGTAATAGAGTTGAAAATATTGATGATGGAAAATTGGTGGAGAGTGAAGAAGTTGTTGATGAGAGTCATACTCAATTGGAGATTTGTGTTGGGAGTTATGTTTCCGGGAACCCGTCTCACGGATCGGTTGATATTGTTTTGAAGTTGTTGGGGAATATTGTGAAGGACCCGGGGAATGTTAAGTTTAGGAAGATTAGGTTGAGTAATCCGAAGATTAAGGAGGCTGTTGCTGAGGTTAGTGGTGGGGTTGAGTTGTTAGGCTTTTTGGGATTTGAGCTTAAGGAGGAGAATGGAGAGACTTGGGCGGTGATGGAGGTTCCCAATGAGGAGAAGACAGGGTTGATTAAGAAAGTGATTGTGTTGTTGGAACTACAGTTCGTAAAGGATCCTCCAGTGTCTACAACTTCTGTTCAGAAAGTAGCCGATGCCGAACCAAAAAAGATCGATAGACAGGTAAAGGTCTTCTTTGCTGTCTCTGAAAGCGTTGCAGCTAAAATTGAGCTACCGGATTCTTTCTACAAACGATCAGCTGATGAGGTGAGAAGAGATGCTGAATTAAGGAGAAAAAAGTTTGAAGAGTCTCAGCTTTTAATCCCCAAGTCCCTTAAAGAAAAACAAGCTAAAGCTGCGAAGAGGCGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGGAATTGTACTTCAAGGCGTATTTGCTCCATGGGAACCAACTACTGCTTTGTATGAGTTTGTCAGCTCTGCATTAAAAGAACAAGGTTTGGAATTCGAGCTAATGCATCCTGTAGTCGTTCTACGGCGAGTTATCCCATGTTTTCCAAAAGCAGGGCAAAAAGCCAAAACAATAGAGGAAGAAGAGTTGGTACCTTCGGCTCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACTAGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1398 0.417 MDDVKDKMKGFMKKVNNPFSSSSSGKFKGQGRTLGSSSSSSSSAPPNSISTPRPSPSPSQNPNPISNPKPKPKPGPTLPVASDDSRTEKARKPGDGFDPFDSLVTSSQRSRNGYTVNVYECPICNTPFRSEDEVSEHVVSCLSNRVENIDDGKLVESEEVVDESHTQLEICVGSYVSGNPSHGSVDIVLKLLGNIVKDPGNVKFRKIRLSNPKIKEAVAEVSGGVELLGFLGFELKEENGETWAVMEVPNEEKTGLIKKVIVLLELQFVKDPPVSTTSVQKVADAEPKKIDRQVKVFFAVSESVAAKIELPDSFYKRSADEVRRDAELRRKKFEESQLLIPKSLKEKQAKAAKRRYTRTIIRIQFPDGIVLQGVFAPWEPTTALYEFVSSALKEQGLEFELMHPVVVLRRVIPCFPKAGQKAKTIEEEELVPSALIKFKPLETDSVVFTSLKNELLEISEPLVNG 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04012 465 Gene3D - 348 441 - -
Vifa6g04012 465 SUPERFAMILY PUG domain-like 177 249 IPR036339 -
Vifa6g04012 465 Gene3D - 179 264 - -
Vifa6g04012 465 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 464 - -
Vifa6g04012 465 Pfam UBX domain 356 404 IPR001012 GO:0005515
Vifa6g04012 465 MobiDBLite consensus disorder prediction 49 77 - -
Vifa6g04012 465 CDD PUB 181 265 - -
Vifa6g04012 465 ProSiteProfiles UBX domain profile. 354 438 IPR001012 GO:0005515
Vifa6g04012 465 SMART PGNneu 183 250 - -
Vifa6g04012 465 FunFam UBX domain-containing protein 6 348 439 - -
Vifa6g04012 465 SUPERFAMILY Ubiquitin-like 325 438 IPR029071 -
Vifa6g04012 465 MobiDBLite consensus disorder prediction 1 107 - -
Vifa6g04012 465 MobiDBLite consensus disorder prediction 15 48 - -
Vifa6g04012 465 Pfam PUB domain 182 254 IPR018997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04012 Vifa-Chr6 1322366357 1322370426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04012 1 386 C2H2 Transcription Factor Family AT2G01650 57.071 2.80e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g04012 UBX 4.1e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04012 6 1322366357 1322370426 Vifa6g04012 6 1322366357 1322370426 ECH