Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00301 ATGGATCCAACCAAAAAGCGCAAGCTTGACGAGAACGGATTCGGCGGCGAATCCGATCACCTTAAACTCTCCCCGTCGGAAGCCCGCAAGGTAATTGAGCGTTTCACCCCCGACCAGTTAATTAACATCCTCCAAGACGCCGTCATCCGTCACCCCGACGTTCTTTCCGCCGTCCGCGCAATTGTAGACACGGATATCTCCCAACGGAAGCTTTTCATCCGCGGCCTCGGTTGGGACACCACCACCGATGGACTCCGTTCCCTCTTTTCAACTTATGGTGAACTTGAAGAGGCTATTGTAATTGTCGATAAGGCTACCGGTAAGTCCAAGGGTTATGGATTTGTCACGTTCCGCCATGTGGACGGGGCTCTACTAGCTCTTCGCGAGCCTAGCAAGCGCATTGATGGACGTGTAACTGTCACGCAACTAGCTGCAGCAGGGAATTCGGGTTCTAACACCAATACAGCGGACATTGCGCAAAGGAAAATATATGTATCTAACGTGCCGCCAGATCTGCCAGGAGATAAGCTTTTAGCCCACTTTTCACTGTATGGGGAGATCGAGGAAGGTCCGTTGGGCTTTGATAAACAGACAGGAAGGTCGAAAGGGTTCGCTCTTTTTGTGTACAAGACACCTGAAGGGGCACAGGCTGCACTATTGGAGCCTGTGAAGAATGTAGAGGGGCGGCAGTTAAATTGCAAGCTGGCAATAACAGATGGGAAGCAGCAAGGGATGCGCGGTGGGCCAGACGGGGCTCAGACCCGTGGGAATACCCATGGGAATGGAATGGGGATGGCTCCTGCAGCTGGGCCTGGGCCGGGTCAATACGGTGGTTCTGTTGGAATGGGTCCTTACGTAGGGTATTCTGGTGGGCATCAGGGTCAGCCTCCAATGGGGAACCATCCTCTGAATTCGTCTGTTGGTGGTGGGTTGTCTTCAGTGGGGAGTCAGGCCCCGTCTTCAGTGGGTGGTGCTGGTGGGTATGGTGGTGGTCATTATGGAGGTTATGGTGGGCCTACAGCGACAGGTTTTGGCAGCAGTGGCAGCAGTGGTTATGGAGGAGGTAGTGGTGGGACCGGGGCAGGTGCCGGCGGTGGACATGGTTCTGCTGGAGGTAATGTCGGGCTCTCTTCTGTGTACAGATTACCAAGTTCTGGAGGATATCCTGACAGCGGTCACTATAGTTCATCGGGTTATCAGAATCATCAGAATCAGCATCTTCCTCCTTCCGGGGCGTCTCCAGTACCAAGGGTTCAACCTGGTTCCATGTATCCAAATGGGCCCCCTTACTACTAA 1296 0.537 MDPTKKRKLDENGFGGESDHLKLSPSEARKVIERFTPDQLINILQDAVIRHPDVLSAVRAIVDTDISQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNTADIAQRKIYVSNVPPDLPGDKLLAHFSLYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGKQQGMRGGPDGAQTRGNTHGNGMGMAPAAGPGPGQYGGSVGMGPYVGYSGGHQGQPPMGNHPLNSSVGGGLSSVGSQAPSSVGGAGGYGGGHYGGYGGPTATGFGSSGSSGYGGGSGGTGAGAGGGHGSAGGNVGLSSVYRLPSSGGYPDSGHYSSSGYQNHQNQHLPPSGASPVPRVQPGSMYPNGPPYY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00301 431 MobiDBLite consensus disorder prediction 288 320 - -
Vifa4g00301 431 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g00301 431 MobiDBLite consensus disorder prediction 383 431 - -
Vifa4g00301 431 MobiDBLite consensus disorder prediction 240 275 - -
Vifa4g00301 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 229 IPR000504 GO:0003723
Vifa4g00301 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Vifa4g00301 431 SUPERFAMILY RNA-binding domain, RBD 63 144 IPR035979 GO:0003676
Vifa4g00301 431 Gene3D - 56 152 IPR012677 -
Vifa4g00301 431 SMART rrm1_1 70 142 IPR000504 GO:0003723
Vifa4g00301 431 SMART rrm1_1 162 234 IPR000504 GO:0003723
Vifa4g00301 431 MobiDBLite consensus disorder prediction 298 320 - -
Vifa4g00301 431 MobiDBLite consensus disorder prediction 389 410 - -
Vifa4g00301 431 PANTHER GEO13361P1-RELATED 52 325 - -
Vifa4g00301 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 170 IPR000504 GO:0003723
Vifa4g00301 431 SUPERFAMILY RNA-binding domain, RBD 154 262 IPR035979 GO:0003676
Vifa4g00301 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 242 IPR000504 GO:0003723
Vifa4g00301 431 Gene3D - 153 277 IPR012677 -
Vifa4g00301 431 FunFam UBP1-associated protein 2C isoform A 52 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00301 Vifa-Chr4 67298797 67300092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00301 157 245 C2H2 Transcription Factor Family AT2G19380 41.935 1.30e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00301 4 67298797 67300092 Vifa4g00301 4 67298797 67300092 ECH