Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00248 ATGAGGGAAGAAGAGATTGAGAAGCTTCGAGGAGTTGTTAGAGACTGTGTCAGTAAGCACCTCTACTCCTCCGCGATCTTCTTCGCCGATAAAGTCGCCGCCTTCACCAATGACCCCGCCGACATTTACATGCAAGCACAGGCTCTCTTCCTCGGCCGCCACTACCGCCGCGCCTTCCATCTCCTCAACGCCTCCAAAATCGTCCTCCGTGACCTCCGCTTCCGCTACCTCGCCGCCAAGTGCCTCGAGGAATTGAAAGAGTGGAATCAATGTCTATCGATGCTGGGTGAAGCCAAAGTGGATGATAATGGAAATGTTTATGATACTAAGGACTCTAATGTTATGTACTTGGATAAAGATAGTCAAGATCGTGAAATCAATATATCTTCTGCAATATGTTTCTTGAGAGGCAAAGCATATGAAGCTCTAGAAAACCGTTCTCAGGCTCGATTGTGGTACAAAGCGGCTATAAAAGCGGATCCCTTATGCTATGAGGCTTTGGAATGCCTTATTGAAAATCACATGCTTACATGTGATGAAGAAACTAATTTGATCTCATCATTGCAATTTGGAAGTGAGGATGGATGGCTTTCATCATTTTATTCTTGTTTGGTTAAGAAGTATGACAAAGAAATTGTTGTGGAAGCCAAGTTTAGACATCTTGAGAACGAGAGCTGTAAAACTGACCAGTCTAATCCTTCTTTCTGTCGCACACTGAAAACCAACACTGATCTATTGGCCTGCAAAGCCGAATACTATCATCAGTGTGGTGAATATCAGAAATGTTTTGAATTAACATTTGTTTTACTTGAGAAGGATCCTTTTCATATCAAGAGCACATTAGTACATCTGGCAGCTGCTATGGAGCTTGGGAATTCAAATGAACTCTATCTGATGGCATGCAATTTAGTGAAGGATTATCCTCAAAAGGCTTTATCATGGTTTGCTGTTGGTTGCTATTACTATTGTATCAAGAAATATGACCAGTCCCGCCGTTATTTCAGCAAGGCGACAAGTCTAGATGGAACATTTCCCCCTGCATGGATAGGCTATGGGAATGCCTTTGCAGCTCAAGAAGAAGGTGATCAGGCTATGTCAGCTTACCGCACTGCAGCTCGATTATTTCCGGGGTGCCATTTACCAGCTCTTTATATTGGAATGGAATGCATGCGGACTCACAGCTATAAGCTTGCTGAACAGTTTTTCATGCAGGCGAAGTCAATTTGCTCATCGGATCCACTTGTGTATAATGAGCTAGGAGTTGTTGCCTACCATATGAAAGAGTATAAGAAAGCAGTATGGTGGTTCGAGAAAACGTTAGCCCTTATCCCGACCGCTTTAAGTGAAATGTGGGAGCCAACTGTAGTCAATATTGCTCATGCATGCAGAAAGTTGGAGATGTACCAAGAAGCAATTTCATATTATGAGAAAGCACTTGCGTTATCAACAAGTGTGAGCACTTATGCTGGTCTTGCATATACTTACCATTTACAGGATGATTTCACTACGGCAATTACATATTATCACAAAGCGTTGTGGCTGAAGCCAGATGATCAGTTCTGCACTGAAATGTTAAGCTGGGCTTTAATAGATGAAAGCAGAAACTGCGCTGAATCTCACCTTGAATTCCGATGA 1635 0.4281 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWNQCLSMLGEAKVDDNGNVYDTKDSNVMYLDKDSQDREINISSAICFLRGKAYEALENRSQARLWYKAAIKADPLCYEALECLIENHMLTCDEETNLISSLQFGSEDGWLSSFYSCLVKKYDKEIVVEAKFRHLENESCKTDQSNPSFCRTLKTNTDLLACKAEYYHQCGEYQKCFELTFVLLEKDPFHIKSTLVHLAAAMELGNSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFPPAWIGYGNAFAAQEEGDQAMSAYRTAARLFPGCHLPALYIGMECMRTHSYKLAEQFFMQAKSICSSDPLVYNELGVVAYHMKEYKKAVWWFEKTLALIPTALSEMWEPTVVNIAHACRKLEMYQEAISYYEKALALSTSVSTYAGLAYTYHLQDDFTTAITYYHKALWLKPDDQFCTEMLSWALIDESRNCAESHLEFR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00248 544 SMART tpr_5 243 276 IPR019734 GO:0005515
Vifa4g00248 544 SMART tpr_5 486 518 IPR019734 GO:0005515
Vifa4g00248 544 SMART tpr_5 452 485 IPR019734 GO:0005515
Vifa4g00248 544 SMART tpr_5 130 163 IPR019734 GO:0005515
Vifa4g00248 544 SMART tpr_5 413 446 IPR019734 GO:0005515
Vifa4g00248 544 SMART tpr_5 311 344 IPR019734 GO:0005515
Vifa4g00248 544 SMART tpr_5 345 378 IPR019734 GO:0005515
Vifa4g00248 544 SMART tpr_5 379 412 IPR019734 GO:0005515
Vifa4g00248 544 SUPERFAMILY TPR-like 37 173 IPR011990 GO:0005515
Vifa4g00248 544 SUPERFAMILY HCP-like 313 519 - -
Vifa4g00248 544 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Vifa4g00248 544 Gene3D Tetratricopeptide repeat domain 5 531 IPR011990 GO:0005515
Vifa4g00248 544 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Vifa4g00248 544 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Vifa4g00248 544 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Vifa4g00248 544 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Vifa4g00248 544 PANTHER CELL DIVISION CYCLE 16,23,27 22 522 - -
Vifa4g00248 544 Pfam Tetratricopeptide repeat 456 482 IPR019734 GO:0005515
Vifa4g00248 544 Pfam Tetratricopeptide repeat 487 518 IPR019734 GO:0005515
Vifa4g00248 544 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00248 290 517 Glycosyltransferase AT3G04240 23.581 5.72e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00248 4 49279728 49288977 Vifa4g00248 4 49279728 49288977 ECH