Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03945 ATGGAAAGAGATTTCTTGAGTCTATGCTCAAATCAAGAAATTAACAATGAACCTTTCAAAGACTCAGGATTTATAAACGTTTCAGCAGTTAAATGGCCGTATTTTAACAAAGTCCCGACTCATCCGTATTCGATGCATTTTAATGGTTCTGAAGAAGATAAGGCTAAAATGACATCTGGTTTCGTAGAGAAATCTTTCAAACCTGACGGACAAGGCGGCATTCATTTTTCCATGAATCCGTATCCTGCACAACATGATGTGCATCGTCCTCATGACGCCGAGATGTTTTCAGTTTCCAATCAAGCAGCAGGACATCCGTTCCTTAAGAATCATTTTTCACCTGTTGGTCAGAATATGAATGGTGCTAATGTGAAGCAACCAATACTTGCGGGATCACCATTAACTGCACCTCATTCAGTTCTTCCAAGGCTTGGTGCTATTGCTGGTTTGATTGAACCATGTGTAAAACCATCTGCACCTGCTCCTCTTCAACTTACCATGTTCTATGCCGGTACCGTGAACATCTTCAAAGATATCACTCCTGAGAAGGTACAAGCCATCATGTTGTTGGCTGGAAATGGCATATCAGCAGCGTCAAACATGGCTCAATCTGAAGTTCAGGCACCTAGCTCAAAGTTTGCATCAGATGATGATGGCGTGCCTATGAGTCCACCTTCAGGGAGTGACTCAGTTTGCAGTGATGAATTCCTGACTGCTAAAACATCTAGAGGCCCTACTCCTACCACTTCTGCTAGCAAAGTGGAGACTCCAAAAGGAGTCAATGCAACCACCATGTTTCCATCAGCTATACCGCAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAAAAGCGAAAGGAAAGGGTGACGAGTGCAGCACCATATAACCTCAACAAGAAATCTGAGGATGCACCATTGCCGAATCCAATGGCTGCTAACAACTCCGCAACTACCGGTACTAGTGCGCCGTTATCAAAGCAAGGATAA 987 0.4387 MERDFLSLCSNQEINNEPFKDSGFINVSAVKWPYFNKVPTHPYSMHFNGSEEDKAKMTSGFVEKSFKPDGQGGIHFSMNPYPAQHDVHRPHDAEMFSVSNQAAGHPFLKNHFSPVGQNMNGANVKQPILAGSPLTAPHSVLPRLGAIAGLIEPCVKPSAPAPLQLTMFYAGTVNIFKDITPEKVQAIMLLAGNGISAASNMAQSEVQAPSSKFASDDDGVPMSPPSGSDSVCSDEFLTAKTSRGPTPTTSASKVETPKGVNATTMFPSAIPQARKASLARFLEKRKERVTSAAPYNLNKKSEDAPLPNPMAANNSATTGTSAPLSKQG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03945 328 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 96 304 IPR040390 -
Vifa3g03945 328 Pfam Jas motif 271 295 IPR018467 -
Vifa3g03945 328 MobiDBLite consensus disorder prediction 226 263 - -
Vifa3g03945 328 MobiDBLite consensus disorder prediction 207 263 - -
Vifa3g03945 328 Pfam tify domain 160 192 IPR010399 -
Vifa3g03945 328 ProSiteProfiles Tify domain profile. 158 193 IPR010399 -
Vifa3g03945 328 MobiDBLite consensus disorder prediction 308 328 - -
Vifa3g03945 328 MobiDBLite consensus disorder prediction 287 328 - -
Vifa3g03945 328 SMART tify_2 158 193 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03945 Vifa-Chr3 1165824430 1165827866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03945 30 301 Tify Gene Family AT3G17860 37.097 1.24e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa3g03945 tify 5.1e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03945 3 1165824430 1165827866 Vifa3g03945 3 1165824430 1165827866 ECH