Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03922 ATGACCGTTCTCAGCGCTCTCCGATCATCCAAACTCATCACCTGGAAGCCCACCGGGAAGCTTCAACAAACCCTAGCAGGATCTGTCAAGGAAGGTGGGGTGAGGATTCGGACTGTGGAGCATTTGCTTTCCGCTTTGGAAGGTGCTGGTGTTGATAATTGTAGGATTCAGATTGAGAATTTGGATGATCAAGATAATGAGGCCGAGATTCCTATATTTGATGGGTCGGCAAGGGAATGGGTGGAAGCCTTGGAAGAAGTTGGTTTAGAGACGGCAACTGATATTGATGGAAAAAGCTGTGAGAAAACTGCTCCACATGTGAATGAACCAGTGCATGTTTGGAGGAATGATTCTTTTATTGCTGCATTTCCGTCTGAAGTGGTTCGAGTAACTTATGGCATAAACTTTCCACAGGCACCTGCTATTGGTTGCCAGTGGTTTTCTACAACCCCCTTGGATGATTTGGTTTATTCAATGCAAATAGCATTTTCAAGAACTTTCTGCATCTATGAGGAGGTTGAGCAAATGCGCAGTGCTGGACTTATCAAAGGGGGTTCTCTAGAAAACGCCATTGTGTGCAGTATTAGTAAAGGTTGGTTGAATCCACCTCTTCGTTTCAGTGATGAACCATGTCGTCACAAGATTTTAGATCTAATTGGCGATCTCTCGCTCTTTGCTCAGTTTGGTAATCAAGGACTCCCTGTGGCACACATAGTAGCTTACAAAGGTGGCCATGCATTGCATGTTGATTTGACACGCCAACTGATGGGAATTACGTGA 780 0.4487 MTVLSALRSSKLITWKPTGKLQQTLAGSVKEGGVRIRTVEHLLSALEGAGVDNCRIQIENLDDQDNEAEIPIFDGSAREWVEALEEVGLETATDIDGKSCEKTAPHVNEPVHVWRNDSFIAAFPSEVVRVTYGINFPQAPAIGCQWFSTTPLDDLVYSMQIAFSRTFCIYEEVEQMRSAGLIKGGSLENAIVCSISKGWLNPPLRFSDEPCRHKILDLIGDLSLFAQFGNQGLPVAHIVAYKGGHALHVDLTRQLMGIT 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03922 259 SUPERFAMILY Ribosomal protein S5 domain 2-like 109 256 IPR020568 -
Vifa3g03922 259 Gene3D lpxc deacetylase, domain 1 3 95 IPR015870 GO:0008759|GO:0009245
Vifa3g03922 259 Gene3D lpxc deacetylase, domain 2 106 258 IPR011334 GO:0008759|GO:0009245
Vifa3g03922 259 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 29 257 IPR004463 GO:0008759|GO:0009245
Vifa3g03922 259 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 23 255 IPR004463 GO:0008759|GO:0009245
Vifa3g03922 259 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 256 IPR004463 GO:0008759|GO:0009245
Vifa3g03922 259 SUPERFAMILY Ribosomal protein S5 domain 2-like 17 91 IPR020568 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03922 5 255 Carbohydrate Esterase AT1G25054 54.305 2.69e-113 327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03922 3 1159298099 1159302483 Vifa3g03922 3 1159298099 1159302483 ECH