Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03918 ATGGCTATCGAAACTCTCGTATTAGGCGCTGGGCAAGAGGTTGGGAAAAGCTGCGTAGTGGTGAACATCAATGGAAAGAGAATCATGTTCGATTGCGGCATGCACATGGGTTACAATGATCACCGTCAATTCCCTGATTTCTCTCTTATTTCACCTTCTGGTGATTTCAATGATGCTCTCTCATGCATCATCATTACTCATTTTCATTTGGATCATGTTGGAGCTTTAGCTTACTTCACTGAAGTTTGCGGGTATGGCGGACCGGTTTACATGACGTACCCAACAAAAGCTTTGTCTCCGTTGATGTTGGAAGACTATCGGAAAGTGATGGTTGATCGTCGGGGTGAGGAAGAACTATTCACTTCTGATCATATTGCTGAGTGCATGAAGAAAGTTATTGCTGTAGATCTGAAGCAGACTGTGCAAGTAGATGAAGATCTGGAGATACGGGCATATTATGCAGGCCATGTTATCGGAGCTGCGATGTTCTATGTAAAAGTTGGAGATGCAGAAATGGTTTATACAGGAGACTACAATATGACACCAGATAGACACCTAGGAGCAGCTCAAATTGATCGACTACGACTTGACCTTCTTATAACTGAATCCACATATGCGACCACAATACGTGATTCAAAATATGCTCGAGAGAGGGAATTCCTCAAAGCTATTCATAAATGTGTTTCTAGTGGAGGAAAGGTGCTTATTCCAACATTTGCACTTGGAAGAGCTCAGGACCAGAACTCGGGGAAGACGATTGGAACTGCTAGAGAGATGAATGAACTGTACTACCTTGATGGAATTCAGTTTGGCAATACATCGTTTTTCGGTTCAAACAGTACAAACTCATCTCGTGTTTTAGATCAAGAACTATGCATTTTGTTGGAGGATTACTGGGAGCGCATGAATTTGAAGGTTCCTATCTACTTCTCTGCAGGATTAACTATTCAAGCTAATATGTATTACAAGATGCTTATTGGTTGGACAAGCCAGAAGATTAAAGATACATACTCCACACATAATGCATTTGATTTTAAGAATGTTCACAAGTTTGAGCGGTCTATGCTTGATGCTCCTGGTCCTTGTGTTCTCTTTGCCACCCCTGGGATGATAAGTGGTGGATTTTCATTGGAAGTTTTTAAACACTGGGCACCGTCAGAAAATAATCTTGTCACTTTGCCTGGGTATTGTTTGGCAGGAACTGTAGGACATAAATTAACATCAGGGAAGTCTACCAACATTGATATAGATCCTGATACACAGATAGATGTGCGTTGCCAGATTCATCAGTTGGCTTTTAGTCCTCACACTGATTCTAAAGGGATAATGGATCTTGTAAAATTTCTCTCCCCAAAGCATGTTATACTAGTGCATGGTGAGAAGCCTAAAATGGATTCTCTAAGAGAAAGAATTCATTCTGAATTGGAGATTCCTTGTTACAATCCCGCAAACAATGAAACCAAATGCAGTTCAGTGGACACACCTAACTCCACTCTGATAGACAGAAACCTCACGCCAGAACTTAAAGTTGAAGATGAAAGAGTAGCAGATGGAGTTTTGGTCATGGAAAGTAACAAAAAGGCAAAAATTGTACACAGAGATGAGGTTTTGATCATGTTGGACAAAAAGAAGCAAGAGGTTTAG 1644 0.4088 MAIETLVLGAGQEVGKSCVVVNINGKRIMFDCGMHMGYNDHRQFPDFSLISPSGDFNDALSCIIITHFHLDHVGALAYFTEVCGYGGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEELFTSDHIAECMKKVIAVDLKQTVQVDEDLEIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAIHKCVSSGGKVLIPTFALGRAQDQNSGKTIGTAREMNELYYLDGIQFGNTSFFGSNSTNSSRVLDQELCILLEDYWERMNLKVPIYFSAGLTIQANMYYKMLIGWTSQKIKDTYSTHNAFDFKNVHKFERSMLDAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLVTLPGYCLAGTVGHKLTSGKSTNIDIDPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMDSLRERIHSELEIPCYNPANNETKCSSVDTPNSTLIDRNLTPELKVEDERVADGVLVMESNKKAKIVHRDEVLIMLDKKKQEV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03918 547 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 5 547 - -
Vifa3g03918 547 SMART Lactamase_B_5a 15 232 IPR001279 -
Vifa3g03918 547 Gene3D - 1 263 IPR036866 -
Vifa3g03918 547 SUPERFAMILY Metallo-hydrolase/oxidoreductase 289 487 IPR036866 -
Vifa3g03918 547 FunFam Integrator complex subunit 11 isoform X3 8 235 - -
Vifa3g03918 547 Pfam Metallo-beta-lactamase superfamily domain 21 191 IPR001279 -
Vifa3g03918 547 SMART Beta_Casp_2 288 406 IPR022712 -
Vifa3g03918 547 Pfam Beta-Casp domain 289 406 IPR022712 -
Vifa3g03918 547 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 422 482 IPR011108 -
Vifa3g03918 547 CDD INTS11-like_MBL-fold 6 203 IPR041897 -
Vifa3g03918 547 Gene3D - 282 433 - -
Vifa3g03918 547 FunFam Cleavage and polyadenylation specificity factor subunit 3-II 285 436 - -
Vifa3g03918 547 SUPERFAMILY Metallo-hydrolase/oxidoreductase 3 246 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03918 Vifa-Chr3 1158724086 1158737882 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03918 3 1158724086 1158737882 Vifa3g03918 3 1158724086 1158737882 ECH