Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03904 ATGGGGAAAAGTAAAACAATTGAGCTGTATGGATTCCCTACTCATGTGAACGTGTCTGATGTGAAGAAGTTTGTAGAGCAGTATACCGGTGAAGGAAGCGTGTTTGCGATGAAGATTAGAGTAGGCAAAGGCCGGAATTCTAGAGCATTTGCAATTATTCAATTCACTACTGCTGAAGATGCTGCAAATATGATGAACTTAGCTAGGGGAACTCCGCCAACATTGGAGTACGGGAGCTCCTATTTAAAAGTTCGGGAAATGGAAAGGGATATTGATTCGAAGCCAAGGGAAGTTGGCGGCAGTTTGAATGATGTGAAACTGTATTTTGGCAGTCAGATCTCGAAGGAAAGATTCTCCGCTCTATGGAGAAAGGTGGATGTTTCTGTAGTTTTCGGGATTGGAACGAGAAAGTGGCGATTCTGTATGTACCATGGTGATAAGAAGTTCAAACTTGAACTTTCGTATGAGAACATTTGGAAGATTGAACTACGTCGACCACGGGGTAAAATTGTAAAGTATCTCCTGATCCAGTTAATTGGCGCTCCTCGGGTTTTTGAGCTTTATGTTCCTACTTCAACAAGTGTATTTGATGATCCTTTGAAGAACTATTGTAGAGATGTCCCTGATGACCAATGGATCCGTGCAATAGATTTCACTCCTTGCAGTTATATTGGCCAGTCTTCTGTTTTATGTCTAGAACTTCCTAGTGACAGAGATTTACCGAATTTCAGGGAAAACTTTGCACATTATGAGGAAAGTGAGGGTCTTTACAGATTGGAGAGTGGATCACCTTTTTCTTGCAATCCGGATATTGTTCCCATGGTTGCTCCTCCTCGAGGAATTCAAATTCCATTTGACATCTTGTTCAAAGTTAACTCGTTGGTTCAGCACGGGTGTCTTTCAGGTTCTGAACTCAATGATGATTTCTATCGTCTAGTTGATCCACTTAAAATAAATGTTGTGTATATCGAGCATGCTTTAGAAAGGATGTACTTTTCACAGGATTTCTGTTATGAACCTGCAAGATGGCTGAAAGATCAGTACAGAATGTACCTTGGTTCAAATAACCCGCCTCGGTCACCGTCTATATCTTTGGATAACGGGTTGGTATATGTTCGCAGGGTTCAGATAACACCATGCAAAGTATACTTTTCTGGTCCAGAGATTAATGTCTCGAATCGTGTTCTCCGTCATTTCCATGAACATATTGATAACTTTCTGCGTGTTTCATTTGTTGACGAGGAGCTGGATAATCTGTATTCAGCAGATTTATCTTCACGTGTTTCTGAGAATGGGAAAACTGAGATATACTATAGGATTCTTTCCATCCTTAGAAATGGCATAGATATTGGTGGTAGGAAGTTTGAATTTCTTGCTTTCTCATCAAGTCAGTTGCGTGAAAACTCACTATGGATGTTTGCTCGTACAGCAACTGGAGTTACCGCCGATTCCATAAGGGAATGGATGGGAGATTTTAGCCGGATAAAAAATGTGGCTAAATATGCTGCTAGACTCGGACAATCTTTTGGTTCGTCAACCGAAACTCTAAGCGTCAGCAGATATGAAATTGAAACTATTCCTGATGTGACGGTTAAAGATACTGAATATGTTTTCTCTGATGGAATTGGGAAAATATCTCTTGAATTGGCCAAGAGAGTGGCTAAAAAATGTGGTTATGATTCTATGCCATCTGCCTTTCAGATTCGGTACGGCGGGTACAAAGGAGTTGTGGCTGTTGATCCAACCTCATATTGGAAGTTGTCACTGAGGGAGAGCATGCACAAGTATGATTCAGATAATGAAAAACTTGATGTTTTAGCATGTAGTAAGTTTCAGCCTTGTTATCTGAATCGACAATTGATTACTCTCTTATCAACTCTCGATGTCAAGGACATTGTTTTTGAGAAAAGACAGAAAGAAGCTGTTGATCAACTGAACACTATACTAACAGATTCAACAAAGGCACATGAGGTTTTGGACTTGATGTCTTCTGGGGAGGTCACTAATATTCTGAAGGAGATGCTTATTTGTGGCTACAAGCCTAACGTTGAACCATTTCTATCAATGATGCTGCAGACATTTAGAGCATCAAAGTTATTGGAATTGCGACAAAAAACTAGGATATTTATTCCAAAGGGAAGAGCAATGATGGGTGTTCTAGACGAAACCACAACCCTTGAATATGGTGAAGTTTTTGTTCAATATTCAAACAGGTTCAGCACTCTTTCTCATGTAGTTAAAGGTAAGGTCGTAGTAGCGAAAAACCCCTGCTTGCACCCGGGCGATGTTCGTGTTTTGAAGGCTGTTGATGTGCCAGACTTGCACCACATGGTGGATTGTGTTGTTTTCCCTCAAAAAGGTCCCAGGCCACATCCGAATGAATGCTCGGGAAGTGATCTAGACGGGGACATCTACTTTGTTTGTTGGGATTCTGAATTGATTCCACCTAGAACAATTGACCCAATGGAGTATGATTCTTCCCAACCTATTGCATTGGATCATGATGTTGAGATTGAGGAAGTGGAAGAGTATTTTGCAAATTACTTGGTCAATGACAGTCTTGGAATAATTGCCAATGCACACACTGTCCATGCAGATAGACAGCCTGAAAAAGCAATGTCTGAGCCATGTATTAGACTTGCAGAACTATTCTCAATAGCAGTTGACTTTCCCAAAACTGGTATTCCAGCAGAAATACCCAGGGAACTTTTCGCCAAAGAATATCCAGACTTTATGGAGAAGCATGACAAAATAACCTACAAATCAGATAATGTAATAGGAAAACTTTTTAGAGAAATTCAAGGAATTTCAATAAACGATGGTTCTATTACATCCTTCACACTTGAACTGGCTAAAAAGTCATATGATCCTGACATGGAATTTGACGGCTTTATGGATTATGTCGATGATGCCTTCTATCACAAATCCAATTATGACTGGAAGTTGGGGAATCTGATGGACTACTACGGTATCAAAACTGAGTCAGAAATCGTTAGTGGGAATATCATGAAAATGTCGAAATCTTTCACCAAAAGAAGGGATGCGGATGCGATTACTGTGGCTGTAAGGTCCCTAAGGAAAGAGGCGAGGAGTTGGTTCAATGAAGGTTCAGATTCTGGAAGTGATGATGCATATGCAAAAGCTTCTGCTTGGTATCATGTTACTTACCATCATAGTTACTACGGTTTGTATAATGATGAAGGTATGAAAAGGGACCATTTTCTAAGCTTTCCATGGTGTGTTTACCATTTGCTTGTCCAAATCAAGAAGGGGAATGCACGAATGAGGATGCATTCTAGCATGGAGCAAAGTTTCAGTCGCCGATTGCGTCTTGATTAA 3339 0.4037 MGKSKTIELYGFPTHVNVSDVKKFVEQYTGEGSVFAMKIRVGKGRNSRAFAIIQFTTAEDAANMMNLARGTPPTLEYGSSYLKVREMERDIDSKPREVGGSLNDVKLYFGSQISKERFSALWRKVDVSVVFGIGTRKWRFCMYHGDKKFKLELSYENIWKIELRRPRGKIVKYLLIQLIGAPRVFELYVPTSTSVFDDPLKNYCRDVPDDQWIRAIDFTPCSYIGQSSVLCLELPSDRDLPNFRENFAHYEESEGLYRLESGSPFSCNPDIVPMVAPPRGIQIPFDILFKVNSLVQHGCLSGSELNDDFYRLVDPLKINVVYIEHALERMYFSQDFCYEPARWLKDQYRMYLGSNNPPRSPSISLDNGLVYVRRVQITPCKVYFSGPEINVSNRVLRHFHEHIDNFLRVSFVDEELDNLYSADLSSRVSENGKTEIYYRILSILRNGIDIGGRKFEFLAFSSSQLRENSLWMFARTATGVTADSIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVSRYEIETIPDVTVKDTEYVFSDGIGKISLELAKRVAKKCGYDSMPSAFQIRYGGYKGVVAVDPTSYWKLSLRESMHKYDSDNEKLDVLACSKFQPCYLNRQLITLLSTLDVKDIVFEKRQKEAVDQLNTILTDSTKAHEVLDLMSSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETTTLEYGEVFVQYSNRFSTLSHVVKGKVVVAKNPCLHPGDVRVLKAVDVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDSELIPPRTIDPMEYDSSQPIALDHDVEIEEVEEYFANYLVNDSLGIIANAHTVHADRQPEKAMSEPCIRLAELFSIAVDFPKTGIPAEIPRELFAKEYPDFMEKHDKITYKSDNVIGKLFREIQGISINDGSITSFTLELAKKSYDPDMEFDGFMDYVDDAFYHKSNYDWKLGNLMDYYGIKTESEIVSGNIMKMSKSFTKRRDADAITVAVRSLRKEARSWFNEGSDSGSDDAYAKASAWYHVTYHHSYYGLYNDEGMKRDHFLSFPWCVYHLLVQIKKGNARMRMHSSMEQSFSRRLRLD 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03904 1112 Gene3D - 2 98 IPR012677 -
Vifa3g03904 1112 SUPERFAMILY RNA-binding domain, RBD 4 87 IPR035979 GO:0003676
Vifa3g03904 1112 CDD RRM_SF 7 85 - -
Vifa3g03904 1112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 89 IPR000504 GO:0003723
Vifa3g03904 1112 Pfam RNA dependent RNA polymerase 377 933 IPR007855 GO:0003968
Vifa3g03904 1112 PANTHER RNA-DEPENDENT RNA POLYMERASE 4 1097 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03904 Vifa-Chr3 1152919128 1152923208 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03904 3 1152919128 1152923208 Vifa3g03904 3 1152919128 1152923208 ECH