Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03903 ATGGTTTCAAGATCTTATTCAAATCTAGTAGAGTTAGCTTCTGGGGAAGCTTCATCATTTGGTTTAGTGAATAGAAGAATTCCAAGGATTATGACTGTTGCTGGATTGATATCTGATGTTATTGTTGATGATGATCAAGTAGAGAGTGTTTGTTCTGATATCTCTTCGTCTTCGGTACATCGCGACCGGATCATAATAGTGGCGAATCAGCTTCCGATTAAGGCTCACAGGAATCATGATGGTGATAGGAGTTTTTGGTCATTTGACTGGGATGAAAATTCACTTCTTCAATTGAAAGATGGAATGGGAGATGATGATATTGAGATTATTTATGTTGGATGCTTGAAAGAAGATGTTCATCCAAATGAACAAGATGAGGTTTCAATGATACTTCTTGAGAATTACAAATGTGTCCCTACTTTTCTTCCGCCGGAGATGTTTACTAAGTACTATCATGGTTTTTGCAAACAACAGTTATGGCCATTGTTTCATTACATGTTGCCGTTATCACCCGAGCTTGGTGGCAGGTTTAATCGGTCTTTATGGCAAGCTTATGTATCGGTGAATAAGATTTTCGCTGATAGGATTATGGAAGTTATTAACCCGGAAGATGATTATGTTTGGATACATGATTATCATCTTATGGTGTTACCGACTTTCTTGAGGAAGAGGTTTAATAGGGTGAAGCTTGGATTTTTCCTTCATAGTCCATTTCCTTCATCGGAAATTTACAAAACTTTGCCTATCAGGGAAGAGCTATTGAGAGCTTTACTTAATTCGGATTTGATCGGGTTTCATACGTTTGATTATGCACGGCATTTCCTCTCGTGTTGTAGTCGGATGCTAGGTCTTACCTACGAATCCAAGCGGGGGTATGTCGGTATTGAGTATTATGGTAGGACTGTTAGTATCAAGATTCTTCCGGTTGGTATACATATGGGTCAGATTCAATCGGTTTTAAGGCTAAAAGAAACCGAGGAAAAAGTTTGCGAGCTGATTCGACAGTTTTCGGATCAAGGAAGGACAATGTTGCTTGGTGTAGATGATATGGATATATTTAAGGGAATAACTTTGAAGCTATTGGCAATGGAGCAGCTTCTCATTCAGCATCCGGAGTATCGAGGAAAAGTGGTATTAGTTCAGATAGCGAATCCTGCTAGGGGGCGAGGGAAAGATGTGCAAGAAATGCAAGACGAGACGAAGGCAACGGTGAAACGTATCAACGAAACGTTTAGGAAACCAGGGTACGATCCTGTTATTTTGATTGACGAGCCGTTGAAGTTTTATGAGAGAGTTGCTTATTATGTTGTTGCCGAGTGTTGTTTAGTCACTGCGGTAAGGGATGGAATGAATCTCATACCGTACGAATACATAGTCAGTCGGCAAGGAAATGAAACTTTGGATAAAGTTTTGAAGATAGGTCCCTCCCCTAAGAAAAAGAGCATGCTAGTTGTGTCCGAGTTCATTGGTTGTTCCCCGTCTTTAAGCGGGGCAATCAGAGTGAACCCATGGAACATCGATGCTGTGGCCGATGCAATGGATTCTGCGTTAGGAATGGCTGATTCGGAAAAACAGCTTCGACATGAAAAGCATTATAGATATGTTAGTACTCATGATGTCGGGTATTGGGCCCGTAGCTTCTTACAGGATTTGGAAAGGGCTTGTAGCGATCATGTACAACGAAGGTGGTGGGGAATTGGGTTTGGATTAAGTTTTAAAGTCGTCGCACTCGATCCGAACTTTAGGAAGCTCTCAATGGATCACATAGTTTCAGCTTACAAACGGACGGCAAATAGGGCGATCCTTCTAGACTACGACGGCACACTAATGCCTCAGGTTTCCATCGATAAGAGTCCAACAGATAAAACCATTGAAATTCTTAATAGCTTGTGTAGAGATAAGAACAACATGGTGTTTCTTGTTAGTGCGAGAAGCCGAAAGATACTCTCGGAATGGTTTTCTCCTTGTGAGAATATAGGAATCGCAGCTGAGCACGGTTACTTTCTGAGAATGAAGCGAGACGACAAATGGGAAACCTGTGTTCCTGCAACTGATTGTAGTTGGAAACAAATCGCAGAGCCTGTGATGAAACTTTATACCGAAACAACTGATGGATCTACCATCGAAGATAAGGAGACTGCACTTGTTTGGTGGTATGAGGATGCAGATCCAGATTTTGGATCATGCCAAGCAAAGGAACTTCTCGATCATCTCGAAAGCGTGCTGGCAAATGAGCCAGTGACTGTGAAAAGTGGCCAGAATTATGTCGAGGTTAAACCACAGGGTGTGAGCAAGGGAATAGTGGCGAAACGTCTACTTTCATCGATGGAAGAAAAGGGAATGTCGCCTGATTTCGTTTTGTGTATAGGAGACGACCGATCTGATGAAGACATGTTCGAGGTAATCACGAGTTCGATGAATGGTCCAATAGCACCGAAAGCAGAAGTATTTGCTTGCACGGTTTGTCGCAAACCGAGTAAGGCTAAGTACTATCTCGATGATACTGCTGAAATAGTGAGATTGATACAAGGTTTAGCTTGTGTTTCAGATCAGAAAGTTTAA 2562 0.4173 MVSRSYSNLVELASGEASSFGLVNRRIPRIMTVAGLISDVIVDDDQVESVCSDISSSSVHRDRIIIVANQLPIKAHRNHDGDRSFWSFDWDENSLLQLKDGMGDDDIEIIYVGCLKEDVHPNEQDEVSMILLENYKCVPTFLPPEMFTKYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYVGIEYYGRTVSIKILPVGIHMGQIQSVLRLKETEEKVCELIRQFSDQGRTMLLGVDDMDIFKGITLKLLAMEQLLIQHPEYRGKVVLVQIANPARGRGKDVQEMQDETKATVKRINETFRKPGYDPVILIDEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIVSRQGNETLDKVLKIGPSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALGMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERACSDHVQRRWWGIGFGLSFKVVALDPNFRKLSMDHIVSAYKRTANRAILLDYDGTLMPQVSIDKSPTDKTIEILNSLCRDKNNMVFLVSARSRKILSEWFSPCENIGIAAEHGYFLRMKRDDKWETCVPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWWYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNYVEVKPQGVSKGIVAKRLLSSMEEKGMSPDFVLCIGDDRSDEDMFEVITSSMNGPIAPKAEVFACTVCRKPSKAKYYLDDTAEIVRLIQGLACVSDQKV 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03903 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 317 - -
Vifa3g03903 853 Gene3D - 728 853 IPR023214 -
Vifa3g03903 853 Gene3D - 598 714 IPR023214 -
Vifa3g03903 853 Pfam Trehalose-phosphatase 602 835 IPR003337 GO:0003824|GO:0005992
Vifa3g03903 853 FunFam Alpha,alpha-trehalose-phosphate synthase 319 536 - -
Vifa3g03903 853 Gene3D Glycogen Phosphorylase B; 55 317 - -
Vifa3g03903 853 FunFam Trehalose-6-phosphate synthase 2 682 761 - -
Vifa3g03903 853 CDD GT20_TPS 63 552 IPR001830 GO:0003824|GO:0005992
Vifa3g03903 853 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 846 IPR001830 GO:0003824|GO:0005992
Vifa3g03903 853 NCBIfam HAD-IIB family hydrolase 601 802 IPR006379 -
Vifa3g03903 853 CDD HAD_TPP 600 840 - -
Vifa3g03903 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 598 715 - -
Vifa3g03903 853 SUPERFAMILY HAD-like 599 846 IPR036412 -
Vifa3g03903 853 Pfam Glycosyltransferase family 20 63 552 IPR001830 GO:0003824|GO:0005992
Vifa3g03903 853 Gene3D Glycogen Phosphorylase B; 318 536 - -
Vifa3g03903 853 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 62 555 - -
Vifa3g03903 853 FunFam Trehalose-6-phosphate synthase 10 729 853 - -
Vifa3g03903 853 NCBIfam trehalose-phosphatase 598 845 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03903 Vifa-Chr3 1152841144 1152843866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03903 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.306 0.0 1425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03903 3 1152841144 1152843866 Vifa3g03903 3 1152841144 1152843866 ECH