Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03902 ATGGAGGAGGGTAAAGAAATTGGAATGAGAAAAGAGATTGAAGAAAATGATGTTGGAAAAGAAAAAGAAAATGATGAAGAGGCTATAAAGAAGATTATTGCAAGCCATCCTTTATTTGAAGTATTGATTGAGTCTCACATTAACTGTTTGAAGGTTGGATCTGAGGATGCTGGAGAGTTTGATATAAAACCTGATGCATGGAAGAAATTGGTGAACACAAAGTCCAAAGAAACGACTAGTCCAAACACTTCAGAGATTGATCACTTCATGGAAGCATATTGCATGGCACTGGACAAGCTCAAAGAATTGATAGAGGAACCAACTAAAGAAGCAAATGCTTTCATCAATTCGGCCTATATTCAACTCAAAGAACTCGATGAAGGAAATAATCTAGCAATTTAA 402 0.3582 MEEGKEIGMRKEIEENDVGKEKENDEEAIKKIIASHPLFEVLIESHINCLKVGSEDAGEFDIKPDAWKKLVNTKSKETTSPNTSEIDHFMEAYCMALDKLKELIEEPTKEANAFINSAYIQLKELDEGNNLAI 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03902 133 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 9 129 - -
Vifa3g03902 133 SMART KNOX2_2 75 127 IPR005541 GO:0003677|GO:0005634
Vifa3g03902 133 Pfam KNOX2 domain 84 125 IPR005541 GO:0003677|GO:0005634
Vifa3g03902 133 Pfam KNOX1 domain 28 53 IPR005540 GO:0003677|GO:0005634
Vifa3g03902 133 SMART KNOX1_2 27 68 IPR005540 GO:0003677|GO:0005634
Vifa3g03902 133 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03902 Vifa-Chr3 1152157536 1152158873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03902 24 125 Homeobox Transcription Factor Family AT4G08150 30.088 7.67e-11 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03902 3 1152157536 1152158873 Vifa3g03902 3 1152157536 1152158873 ECH