Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03900 ATGATAATCAGATCCAGAACTTCGAAACGGAAGCTTCAGGAAGCACCGTTGCACGCCGTTAGCAAGAAGCTCCGGTCGAAGATTCCTCGCCGGAGAAGACGTCAGATCTCGCCAGTGCTGATTTCTGGCGAGAATCGGAATTTGTTAGTTATTTCTGTGAATTCGAGCTCCGGTTCTGATTTCGCCGGTGGTGGTGAAGTTTCGTGCAATTCGAGCAGGATTTCTGCTGTTTTGTCCAGTAAACGTTCGAGAAATGAAGTTTCAAGCGAAATCGATTGCGTTCTGGAGGAAGAATGTGTGAGTTTGTTGAGGAATCCGAGATTTGAGAAGCGGAGTGAAAATCAAGTGGAGGTTTCTGAGACTTCGTGTGTGGATTCTAATTCTGGAGTTCGTGAGCGGAGTAGGAGCTTAATTTTGAAGTTCAATACTGGAAAAGAGAATGATGAAATTTCGGAAGTTACTTGTGCTGAGAATTCAAAATTGAGTAACGGAAATTTGACTATTACGCGAAATGATGTCGTTTCTGTTGGTTCTGATGCTCGAGAAACGTCGTTTATAGATGAGAACGGCATGGATTTGAAAGCGGAGCCGATTATAAAGCAATTGCCGGATAATTCAGGTTACGATTCCGATCTAGCTTGCTCTGAGCAATTTCAATTTTCGTACTACGAAGATGAATTGGAGTATTGTTCGAGTCAGGGAACTACATTCTCTGATCTTCACTCCGAGATGTTTGGTGAATGCTCAGACTGTAGTCAGTTGTTTGAATCTGGTAGCGAGTTTTCACAGGGATCCGTTGGTGAAACTCCTTCTCACACTTACTCGTTGCTCCTTCGATACCGCGAGGAATTCACGAAGTTAGCTTATCCTGTTAATAATACCTCACGTGTTGAAGAAGATGCTTCTCTTCAATGCAATTTTTCAAGGTTTGAAGATTTGGATGATGAAGACAGTTACAAGATGCTTAGAATGAGGGAGCGGAAGCAAGTTTTCATGTGGAATTATGCTGAGAGATATTTCTCTACAACGGATTTTACTGAGCTTGTATTTCAGCAACGCTGCCGAATGGTTCACTGGATCGTTGAGCATTCTTATCGAAAAATGCTTCGACAAGAGACAATATTTCTTGCAATCAGCCTACTTGACCGTTTCCTGAGCAAGGGATACTTCAAAGCTGAAAAAAACCTTCAAATTATTGGAATAGCGTGTTTCACGTTGGCAATCAGAATTGAAGAAAACCAGCAATTTAACAGAGTGGGGCAAAAAAATTTCTACATAGAAAAAAATGTGTACAGTAGATGTGAAGTGGTGGCTATGGAATGGATGGTGCAGGAGGTGCTCAAGTTTCAGTGTTTTCATCCAACCATCTACAATTTCTTGTGGTTCTACCTTAAAGCTGCTAATGCTGATGCTGTTATGGAGAAAAGGGTCACTTGCCTAGCATTACTGGCTCTGTCAGGTCCTGATCAGCTGTGTTACTGGCCCTCAACTATTGCTGCTGCACTTGTAATCCTTGCTTGTCTAGAACACAATGAGAATGCATCCAACAAAGTCATAGGGATCCACATTCGATCAAAGGATGAGAATTTGCATGAATGCATGGAGAGCCTGGAGTGGTTGTTACGCTATCTATGA 1635 0.4232 MIIRSRTSKRKLQEAPLHAVSKKLRSKIPRRRRRQISPVLISGENRNLLVISVNSSSGSDFAGGGEVSCNSSRISAVLSSKRSRNEVSSEIDCVLEEECVSLLRNPRFEKRSENQVEVSETSCVDSNSGVRERSRSLILKFNTGKENDEISEVTCAENSKLSNGNLTITRNDVVSVGSDARETSFIDENGMDLKAEPIIKQLPDNSGYDSDLACSEQFQFSYYEDELEYCSSQGTTFSDLHSEMFGECSDCSQLFESGSEFSQGSVGETPSHTYSLLLRYREEFTKLAYPVNNTSRVEEDASLQCNFSRFEDLDDEDSYKMLRMRERKQVFMWNYAERYFSTTDFTELVFQQRCRMVHWIVEHSYRKMLRQETIFLAISLLDRFLSKGYFKAEKNLQIIGIACFTLAIRIEENQQFNRVGQKNFYIEKNVYSRCEVVAMEWMVQEVLKFQCFHPTIYNFLWFYLKAANADAVMEKRVTCLALLALSGPDQLCYWPSTIAAALVILACLEHNENASNKVIGIHIRSKDENLHECMESLEWLLRYL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03900 544 SUPERFAMILY Cyclin-like 454 541 IPR036915 -
Vifa3g03900 544 PANTHER CYCLINS 294 537 IPR039361 -
Vifa3g03900 544 Pfam Cyclin, C-terminal domain 454 538 IPR004367 -
Vifa3g03900 544 SUPERFAMILY Cyclin-like 313 450 IPR036915 -
Vifa3g03900 544 ProSitePatterns Cyclins signature. 353 384 IPR006671 -
Vifa3g03900 544 CDD CYCLIN_SDS-like_rpt2 454 541 - -
Vifa3g03900 544 Gene3D - 446 543 - -
Vifa3g03900 544 Pfam Cyclin, N-terminal domain 346 450 IPR006671 -
Vifa3g03900 544 SMART cyclin_7 358 445 IPR013763 -
Vifa3g03900 544 Gene3D - 326 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03900 Vifa-Chr3 1150811301 1150814884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03900 353 540 Core Cell Cycle Gene Families AT5G25380 32.653 4.71e-18 85.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03900 3 1150811301 1150814884 Vifa3g03900 3 1150811301 1150814884 ECH