Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03899 ATGTCGATATCAGTTGACCATACAGATCAAAGAGCTGAAGCGATTCCATGTTCGACAGCTACACCGAATTGGACCGTTCATGTTTCAGATATAAGAACGGTTAAAGTGAGTAACATATCACTGATTACTTCCAAACAAGACATTGAAGAATTCTTTTCATTCTCAGGTGATATTCAATATATTGAGATGCAAAGAGAATCTGATCGCACTCAGGTTGCATATGTTACCTTTAAGGATTCACAGGGAGCAGAGACAGCAGTTCTCTTGACAGGTTCTAAGATAGGTGACCTATATGTCACCATATCACCTGTGGAGAAGTACCAACTTCCCCCCGAAGCTCTTCCGTCAAGTCCTACAAACCAAAGTACTGCCGCTGTTAAGAAAGCTGAAGATGCCATAAGTACCATGCTTGCCAAGGGTTTCATTTTGGGAAAGGATGCAATCAACAAGACAAAATCCTTAGATGAGCGTCTTCATTTGACCTCTAATGCTTCTTCAACAGTTGCTTCGATTGATCGTAAAATTGGTTTAAGTGATAAACTAAGTATTGGAACAACAATTGTCAATGAAAAGGTGAAAGAGATGGATGAAAGGTATAAGCTTTCTGGAATGACGAAGTCAGCTTATGCTGTTGCTGAGCAAAAGGCGAGTAGTGCTGGATCTGCTATCATGAGCAATTCTTACGTCTTGACCGGAGCTTCATGGGTGTCGAGTGCATTTAGTGTTATTGCAAAGGCAGCCGAGGATGTCAGCACGAGGACCAAGGAGAAGGTTGAACAAGCTGAGGTGGGAAGAAATGAGATTATTTACAGTGAAAGAAAAGTGATGGTCGATGAGTTTTCTCAGATGCACTTTGAGCAGTCTTTAAACAGCGGCCCTGCAGTCGTTCCTGTTAATTCCAACAATGACAGTAAAGCTGGTAATTTTCTAACTTGA 936 0.4145 MSISVDHTDQRAEAIPCSTATPNWTVHVSDIRTVKVSNISLITSKQDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKDSQGAETAVLLTGSKIGDLYVTISPVEKYQLPPEALPSSPTNQSTAAVKKAEDAISTMLAKGFILGKDAINKTKSLDERLHLTSNASSTVASIDRKIGLSDKLSIGTTIVNEKVKEMDERYKLSGMTKSAYAVAEQKASSAGSAIMSNSYVLTGASWVSSAFSVIAKAAEDVSTRTKEKVEQAEVGRNEIIYSERKVMVDEFSQMHFEQSLNSGPAVVPVNSNNDSKAGNFLT 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03899 311 SMART rrm1_1 33 102 IPR000504 GO:0003723
Vifa3g03899 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 96 IPR000504 GO:0003723
Vifa3g03899 311 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 31 261 - -
Vifa3g03899 311 Gene3D - 28 102 IPR012677 -
Vifa3g03899 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Vifa3g03899 311 SUPERFAMILY RNA-binding domain, RBD 25 107 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g03899 Vifa-Chr3 1150808715 1150810544 Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03899 3 1150808715 1150810544 Vifa3g03899 3 1150808715 1150810544 ECH